BAC Information

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BAC

Clone NameMSMg01-058H11
Chromosome5 (Build37)
Map Location 62,866,129 - 62,866,300
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041524, G6pd2, LOC100041543
Downstream geneCentd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-058H11.T7 (MSMg01no058_h11.b1)MSMg01-058H11.TJ (MSMg01no058_h11.g1)
ACCAG285375AG285376
length733748
length of high quality
(start - end)
173 (125 - 297)172 (72 - 243)
definitionCHROMAT_FILE: MSMg01no058_h11.b1 PHD_FILE: MSMg01no058_h11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:00:43 2005CHROMAT_FILE: MSMg01no058_h11.g1 PHD_FILE: MSMg01no058_h11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:00:43 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTAAATTCCCCGTGCTACCATGGCTAATAACTTTAGAAGTCTGGAGA
TGACTTCTTCCCTGTCTACCCAATATTCTTGAGGTCATGGGTAACTTAGC
AATTGTGATTTTCAATTCGATAATTCTAGTTTTTGTCTTCATCTTATGTT
TTTTTCTCTATTTTTCCTACCTCTCAAATGCATGCTGGACTCAGGGATCA
TCCTAATCTACCATCATCTAACTTTACATCCAATCTGCAAAAAACTCCCT
ATGTCCCAGAATAATTATATTTATTACATATAACTCATTGAAATGAATAG
CTAGCTTTTTTTTTTCTTCCCCCCCCCGACAGAGATATTCTATCCTTATG
ACAATTGGTATCTTGTCTATCTGATAAAATTTCTTTATTACTTAGGCTGG
TAAACAACTCCTTTGTTATTTTCATTAATAACCCAACCCTTGTCCTTGAT
GACCTTTGATAACCCTACTCGTCAATCGTCCGCTACATTTTTTGTGTAAT
ACGTTTTCCCCTATTTTTTTTATCTACGCCTTTATCCATTCATAACTCCT
CTACACATGTTTATTTTCTATATTTAATCTGGTCAACGAATCATCACAGA
GAACTCTTAGAAACATATCCTATACCTTCTTATTTGTGGCATTACTTCTC
TCCAATAGCCCGCAATTAATTTTCATATTATTT
ATTGCTTTGAGTGGCCTGGAGAGCGCCTTTCCCAAAAAGXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTTTGTTCAGCTCTGAGCCCCATTTTTTAA
TGGGGTTATTTGATTTTCTGGAGTCCACCTTTTTGAGTTCTTTATATATA
TTGGATATTAGTCCCCTATCCGATTTGGAATAGGTAAAGATCCTTTCCCA
ATCTGTTGGTGGCCTTTTTGCCTTATTGACGGCGTCTTTTGTTTTGTAGA
AGCTTTGCAATTTTATGAGGTCCCATTTATCGATTCTTGATCTTACAGCA
CATAGCCATTGCTGTTCTTTTCAGGAATTTTTCCCCTGTACCCATATCTT
CGAGGCTTTTCCCTACTTTCTCCTCTATAAGTTACAGCGTCTCCGGCTTT
ATGTGGAGCTCCTTCATCCACTTAGATTTGACCTTATCACTTGGTACAAC
AGGCTGAGACTGAAATTACGGATCGATGTAAAGATCTCCCATGCTCCTGT
TATTGCCAGGATCATCATTCGTAATAATAGGCCATCTTGCCTAAACCCAC
TCCCTCGTATTCATTGCTACGCCCCATCAACATTTCCCTATTCATGTTCC
TTCTAGTAATCCTCTATAGCGGCAACCCGCCCCAATTTCCCCTCGGAATT
TCCTAATATTCCCTATGTCACTCTCAAAAATTGTCTTCTTTTGCGCAATA
AAAAAAACCCTTTCTGGTTGGTATATTCACCCTTGGCCTGTTCTTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no058_h11.b1 MSMg01no058_h11.b1 CHROMAT_FILE:
MSMg01no058_h11.b1 PHD_FILE: MSMg01no058_h11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:00:43 2005
         (173 letters)



>mm_chr5_62865929_62866500
          Length = 572

 Score =  296 bits (153), Expect = 5e-85
 Identities = 168/173 (97%), Gaps = 1/173 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   attcttgaggtcatgggtaacttagcaattgtgattttcaattcgataattctagttttt 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 372 attcttgaggtcatgggtaacttagcaattgtgattttcaattcgataattctagtgttt 313

                                                                       
Query: 61  gtcttcatcttatgtttttttctctatttttcctacctctcaaatgcatgctggactcag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 gtcttcatcttatgtttttttctctatttttcctacctctcaaatgcatgctggactcag 253

                                                                
Query: 121 ggatcatcctaatctaccatcatctaactttacatccaatctgcaaaaaactc 173
           ||||||||||||| ||  |||||||||||||| ||||||||||||||||||||
Sbjct: 252 ggatcatcctaatataatatcatctaacttta-atccaatctgcaaaaaactc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 173
Length of database: 572
Length adjustment: 8
Effective length of query: 165
Effective length of database: 564
Effective search space:    93060
Effective search space used:    93060
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)