Query= MSMg01no059_b09.b1 MSMg01no059_b09.b1 CHROMAT_FILE:
MSMg01no059_b09.b1 PHD_FILE: MSMg01no059_b09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:01:30 2005
(623 letters)
>mm_chr5_140507130_140508151
Length = 1022
Score = 766 bits (396), Expect = 0.0
Identities = 481/542 (88%), Gaps = 56/542 (10%)
Strand = Plus / Minus
Query: 1 agggttttacccagcataccaggatcccacccagcatgttagggttccatctaatataat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 agggttttacccagcataccaggatcccacccagcatgttagggttccatctaatataat 481
Query: 61 acgattctgtccagcataaaggggttccacccagcatgttagggttctgcccagtatact 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 acgattctgtccagcataaaggggttccacccagcatgttagggttctgcccagtatact 421
Query: 121 agagttctgtccccagcctactgcatcctggggtttcatccagcatacaggtattctatc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 agagttctgtccccagcctactgcatcctggggtttcatccagcatacaggtattctatc 361
Query: 181 taacatgctggga-tttgtccagtttccagcgtcccagggttaacccagtgtaccataat 239
||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 taacatgct-ggagtttgtccagtttccagcgtcccagggttaacccagtgtaccataat 302
Query: 240 tccatccggattactggcgtgctctctaatatactgaggtgccgtttagcgttgtggagt 299
|||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 301 tccatccggattgctggcgtgctctctaatatactgaggtgccgtttggcgttgtggagt 242
Query: 300 gccatgtaatgtatcagggagccatctatcatacctttcgtt---c-ttgtg-------- 347
||| ||||||||||| ||||||||||| || ||||||||||| | |||||
Sbjct: 241 gccgtgtaatgtatc-gggagccatctgtcgtacctttcgtttagcgttgtggagtgccg 183
Query: 348 tgt-----------------------------------------ctgctcactggctggt 366
||| ||||||||||||||||
Sbjct: 182 tgtaacgtatcgggagccatccgtcgtacctttccttcttgtgcctgctcactggctggt 123
Query: 367 tttcttccctgctctgtggtcacgtgggactggcaggctcatactcttccccacttcatt 426
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122 tttcttccctgctctgtggtcacgtgggactggcaggctcatactcttccccacttcatt 63
Query: 427 ttcattcaagctctaaaaggcctggagttctggtggggtcctcttgtgccggctgcttgg 486
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62 ttcattcaagctctaaaaggcctggagttctggtggggtcctcttgtgccggctgcttgg 3
Query: 487 ca 488
||
Sbjct: 2 ca 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 623
Length of database: 1022
Length adjustment: 10
Effective length of query: 613
Effective length of database: 1012
Effective search space: 620356
Effective search space used: 620356
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no059_b09.g1 MSMg01no059_b09.g1 CHROMAT_FILE:
MSMg01no059_b09.g1 PHD_FILE: MSMg01no059_b09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:01:30 2005
(541 letters)
>mm_chr5_140431933_140432873
Length = 941
Score = 1031 bits (533), Expect = 0.0
Identities = 539/541 (99%)
Strand = Plus / Plus
Query: 1 aattcactttgtagaccaggctggccttgaactcagaaatccgcctgcctctgcatccca 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 201 aattcactttgtagaccaggctggccttgaactcagaaatccgcctgcctctgcctccca 260
Query: 61 agggctgggattaaaggcgtgcgccaccacactcggctacagcctgatcttatggagaca 120
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 261 agggctgggattaaaggcgtgcgccaccacgctcggctacagcctgatcttatggagaca 320
Query: 121 ttttctccatcgaggcttcctctgctgcgatgactcttcctgtgtcaagttgacacaaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttttctccatcgaggcttcctctgctgcgatgactcttcctgtgtcaagttgacacaaaa 380
Query: 181 ctagtatatagacagagcaccatctcctgttctgctcaggatgtctctatgacatcaact 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctagtatatagacagagcaccatctcctgttctgctcaggatgtctctatgacatcaact 440
Query: 241 gagtatgcatcttgaagttcgtcttctgtctttctgttccctgcatgtggcatgggggcc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gagtatgcatcttgaagttcgtcttctgtctttctgttccctgcatgtggcatgggggcc 500
Query: 301 acacttctctgcccacttgtggagcaagttttgttgtgcccgaggacttgagccactaat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 acacttctctgcccacttgtggagcaagttttgttgtgcccgaggacttgagccactaat 560
Query: 361 ccttttggaaggaatatcaccataggatcttcaagcttgttacagtgtgcctgggtgggg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ccttttggaaggaatatcaccataggatcttcaagcttgttacagtgtgcctgggtgggg 620
Query: 421 acagcacccacagtctgctcctagagtcatcaggccaaagagagcgcaagttggggtctg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 acagcacccacagtctgctcctagagtcatcaggccaaagagagcgcaagttggggtctg 680
Query: 481 ggaggctctccagggtcttccaaagcagaggtgggacacaagacaggtacaggacacttg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ggaggctctccagggtcttccaaagcagaggtgggacacaagacaggtacaggacacttg 740
Query: 541 g 541
|
Sbjct: 741 g 741
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 541
Length of database: 941
Length adjustment: 10
Effective length of query: 531
Effective length of database: 931
Effective search space: 494361
Effective search space used: 494361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
