BAC Information

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BAC

Clone NameMSMg01-059E09
Chromosome5 (Build37)
Map Location 21,763,854 - 21,764,496
singlet/doubletsinglet
Overlap geneReln
Upstream geneA530088I07Rik, Fgl2, AI847670, Fbxl13, LOC625004, LOC667253, Armc10, AB112350, Pmpcb, Dnajc2, Psmc2, Slc26a5, Dnaja1-ps
Downstream geneLOC100041982, Orc5l, LOC100042049, LOC668232, LOC100042067, LOC671222, LOC625174, Lhfpl3, EG625219, LOC100042101
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-059E09.T7 (MSMg01no059_e09.b1)MSMg01-059E09.TJ (MSMg01no059_e09.g1)
ACCAG285991AG285992
length725731
length of high quality
(start - end)
646 (45 - 690)226 (193 - 418)
definitionCHROMAT_FILE: MSMg01no059_e09.b1 PHD_FILE: MSMg01no059_e09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:01:44 2005CHROMAT_FILE: MSMg01no059_e09.g1 PHD_FILE: MSMg01no059_e09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:01:44 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGACCGCGGAA
TTCTGTGGTGTTACTCACATTCCTGGGTCAAATTCAGCAATTCGGTTGTC
AAAGAGACAGCAGGCCAACCTCACAAGGCAGCTGCTGAGGAGCTGGGATG
GGACTCAGAATCCACTTCCATGTTATCTAGAGCATTTACACCCCAGCTAA
CTAACCATTTACACCATCCCAAGAAATAGGGAACTGATGACTACCCTGTG
ATGAGCCCTAACAGAGGCAGCCTGCCTGGACATTACAGCGGTGCTATGGT
TTGAATATAGCCTGTTACTACCGAAAGTCATGTCAGGATTTGGTTTCCAG
TGTCAGAACTGAGATGTGATGAAGTCCTAGAGAGGAAGTGAGCTCCCTTT
CCTGCCATCTTGATTGCCTACTGTGAGAAGACTGTTACACAGGGTCCTGG
CCTACTAACATGCTGTCTCCAAACCAACATGAAATAAATGAGCAAGATGA
AAGACATGGCCAAGTGAAAATCATTCCCTTTGCAATCGGCCACCTCTGAG
GACTCTCCCTACACGCAGTCCCCTCTTATTATCTGCCCCCAGGTCTTCAG
CTTTCTGCTGTGAAACCTGAGACCCAGTGACTGCCTCTGGGCATCCCAGC
CTCTAAAACTATGAGCTAAACAAAGGTCTTTCCCTTTCAACCCCTGTACC
AGGTAATGTGTTGAGCAGTCGAAGC
CAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCCTCTGAACACCGAGAGTGTTATTA
GGAATCTTTCTCATTATGATACAACGAGTTCCCAGCCAGATAGAATGCTA
GCTAATCAGATGAAGAAAAAGCCAAAAGCGGCTGGCGAAGGCCAGCATGC
TGTTCAGCCTCCGGGCAGTCGGCTTCAAGGTCATAGTGCACTTCCGCCCT
ATGCGGAGCCCCCGCCCTGCGTAAGGCGTCAGCCCTGCGCAGAGAGGCAA
TGGACAGAGAGGCAATGCGCATATTTGTTCATTCCAAAGGAGGAACAAAG
GAAAATACAACAGGCATTTCCGGTCTTTGAAGGAGCCGAGGGTGGGCGTG
TCCACGCTCCGGTAGAACACCCGCAGATTAAAGAGCTTGCTGAGTCAGTC
CGTAAATATGGAACCAATGCTAATTTTACCTTGGTGCAGTTAGACAGGCT
TGCTGGCATGGCACTAACTCCTGCCGACTGGCAAATGATTGCAAAAGCCG
CTCTCCCTAGTATGTGTCAAAATATGCAATTTGACAGTTCTATGTACAGA
GGCTCGCCAAGCGAACGCCCGAAACAACGCTGCCGTTTTGACTCCACAAC
ACATAGAATGCACCTTTGACTTGTTATCGCCCACAGAACTTCAACCTGCT
GATTTAACCAACTACCACTGCGGCCATTTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no059_e09.b1 MSMg01no059_e09.b1 CHROMAT_FILE:
MSMg01no059_e09.b1 PHD_FILE: MSMg01no059_e09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:01:44 2005
         (646 letters)



>mm_chr5_21763651_21764696
          Length = 1046

 Score = 1114 bits (576), Expect = 0.0
 Identities = 627/644 (97%), Gaps = 2/644 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   gaattctgtggtgttactcacattcctgggtcaaattcagcaa-ttcggttgtcaaagag 62
           ||||||||||||| || |||||||||||||||||||||||||| || |||||||||||||
Sbjct: 204 gaattctgtggtgctattcacattcctgggtcaaattcagcaactt-ggttgtcaaagag 262

                                                                       
Query: 63  acagcaggccaacctcacaaggcagctgctgaggagctgggatgggactcagaatccact 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 acagcaggccaacctcacaaggcagctgctgaggagctgggatgggactcagaatccact 322

                                                                       
Query: 123 tccatgttatctagagcatttacaccccagctaactaaccatttacaccatcccaagaaa 182
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| 
Sbjct: 323 tccatgttatctagagcatttacaccccagctaactaaccatctacaccatcccaagaag 382

                                                                       
Query: 183 tagggaactgatgactaccctgtgatgagccctaacagaggcagcctgcctggacattac 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 tagggaactgatgactaccctgtgatgagccctaacagaggcagcctgcctggacattac 442

                                                                       
Query: 243 agcggtgctatggtttgaatatagcctgttactaccgaaagtcatgtcaggatttggttt 302
           ||| |||||| ||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 443 agctgtgctacggtttgaatgtagcctgttactaccgaaagtcatgtcaggatttggttt 502

                                                                       
Query: 303 ccagtgtcagaactgagatgtgatgaagtcctagagaggaagtgagctccctttcctgcc 362
           |||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||
Sbjct: 503 ccagtgtcagaactgagatgtgatgaggtcctagagaagaagtgagctccctttcctgcc 562

                                                                       
Query: 363 atcttgattgcctactgtgagaagactgttacacagggtcctggcctactaacatgctgt 422
           ||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 atcttgattggttactgtgagaagactgttacacagggtcctggcctactaacatgctgt 622

                                                                       
Query: 423 ctccaaaccaacatgaaataaatgagcaagatgaaagacatggccaagtgaaaatcattc 482
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 ctccaaaccaacatgaaataaatgagcaagatgaaagacatggccaagtgaaaatcattc 682

                                                                       
Query: 483 cctttgcaatcggccacctctgaggactctccctacacgcagtcccctcttattatctgc 542
           |||||||||||||||| ||||||||||||||||||| | |||||||||||||||||||||
Sbjct: 683 cctttgcaatcggccatctctgaggactctccctacgcacagtcccctcttattatctgc 742

                                                                       
Query: 543 ccccaggtcttcagctttctgctgtgaaacctgagacccagtgactgcctctgggcatcc 602
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 743 ccccaggtcttcagctttctgctgtgaaacctgagacccagtgcctgcctctgggcatcc 802

                                                       
Query: 603 cagcctctaaaactatgagctaaacaaaggtctttccctttcaa 646
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 803 cagcctctaaaactatgagctaaacaaaggtctttccctttcaa 846


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 646
Length of database: 1046
Length adjustment: 10
Effective length of query: 636
Effective length of database: 1036
Effective search space:   658896
Effective search space used:   658896
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)