Query= MSMg01no059_f22.b1 MSMg01no059_f22.b1 CHROMAT_FILE:
MSMg01no059_f22.b1 PHD_FILE: MSMg01no059_f22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:01:51 2005
(589 letters)
>mm_chr5_88327313_88328301
Length = 989
Score = 942 bits (487), Expect = 0.0
Identities = 568/611 (92%), Gaps = 28/611 (4%)
Strand = Plus / Plus
Query: 4 gaattctgtttcttatccctcctcttattctccttcttcattgtccatccccaccaatta 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 gaattctgtttcttatccctcctcttattctccttcttcattgtccatccccaccaatta 263
Query: 64 aaatcccctctctgtttccccactcattgtcaactgtttgacactactctgctctctaga 123
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 aaatcccctctctctttccccactcattgtcaactgtttgacactactctgctctctaga 323
Query: 124 gttcactttcccctctccctagcccctttttcattcccttgtttt-gtgtgtactcatag 182
||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 324 gttcacttttccctctccctagcccctttttcattcccttgtttttgtgtgtactcatag 383
Query: 183 aagaagatttggagtgggaacaaagatgagagtgaatttaagactctgagtctgggttac 242
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 cagaagatttggagtgggaacaaagatgagagtgaatttaagactctgagtctgggttac 443
Query: 243 ctcactgaatatagtattttctagttcta------------cttgcaaatttcgtgattt 290
|||||| |||||||||||||||||||||| |||||||||||||||||||
Sbjct: 444 ctcactcaatatagtattttctagttctatttattcatttacttgcaaatttcgtgattt 503
Query: 291 cattccatagtgtatacatactacattttcattatctattggttgaaggacatgtagatt 350
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 504 cattccatagtgtatacatactacatttccattatctattggttgaaggacatgtagatc 563
Query: 351 atttccatttcttaggttattatgaatagggctgaaatggttaaggaagctgagtccttt 410
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 564 atttccatttcttaggttattatgaataggattgaaatggttaaggaagctgagtccttt 623
Query: 411 gggtacacactaaggacagataaagatgggttatgtggtaaacttaggctatttgtttgt 470
|||||||||| ||||||||||| ||||||||||||||||||||||||||| |||||||||
Sbjct: 624 gggtacacaccaaggacagatatagatgggttatgtggtaaacttaggctgtttgtttgt 683
Query: 471 ttgttt------------tgttttgtttgtttgcgttctccacaatagatttcagagtga 518
|||||| ||||||||||||||| ||||||||||||| ||||||||||||
Sbjct: 684 ttgtttgcttgtttgttttgttttgtttgtttgagttctccacaataaatttcagagtga 743
Query: 519 ctaaaccagtttgcaatcccagcaacagagatgactccctttgcctcaaatcccctccaa 578
|||||||||||||||||||||||||||||||||||||||||||| ||| ||| |||||
Sbjct: 744 ctaaaccagtttgcaatcccagcaacagagatgactccctttgcttcacatc---tccaa 800
Query: 579 tatctgctggc 589
|||||||||||
Sbjct: 801 tatctgctggc 811
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 589
Length of database: 989
Length adjustment: 10
Effective length of query: 579
Effective length of database: 979
Effective search space: 566841
Effective search space used: 566841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no059_f22.g1 MSMg01no059_f22.g1 CHROMAT_FILE:
MSMg01no059_f22.g1 PHD_FILE: MSMg01no059_f22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:01:51 2005
(531 letters)
>mm_chr5_88451861_88452791
Length = 931
Score = 915 bits (473), Expect = 0.0
Identities = 513/531 (96%), Gaps = 8/531 (1%)
Strand = Plus / Minus
Query: 1 aatagaattaaaaaggtgtgatagtcagcatagttcagtgtggctaagaggattgtggat 60
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 654 aatagaattaaaaaggtgtgatagtcagcatagtccagtgtggctaagaggattgtggat 595
Query: 61 ctgggttaggagagactagtgtgaggtcaaggaaaatccacccaactggaatatgaaaac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 594 ctgggttaggagagactagtgtgaggtcaaggaaaatccacccaactggaatatgaaaac 535
Query: 121 acaacaaagaagcttgttatttcttgttaattaaatattaataaaacaaattggtgcccc 180
||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||
Sbjct: 534 acaacaaagaagcttgttacttcttgttaattaaatattaataagacaaattggtgcccc 475
Query: 181 tcagaactgtgatacgggatgtaattttatgaaccgtgaaaggatggcctttgtgtgagg 240
|||| |||||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 474 tcagtactgtgatacaggatgtaattttatgaaccgtgaaaggatggccttagtgtgagg 415
Query: 241 atggaactgctttccagtttcctcttatgcctcttgagtcacttgagataataacatgtc 300
|||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 414 atggaactgccttccagtttcctcttatgcctcttgagtcacttgagatgataacatgtc 355
Query: 301 tatgccaaatgtagactatgctatgataatcaagcttcttacagtcctaatttgtggtaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 tatgccaaatgtagactatgctatgataatcaagcttcttacagtcctaatttgtggtaa 295
Query: 361 tttattttgcagctgcagaaacctattacatgctttaatgtaaaagtcctcaaagacact 420
||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 294 tttattttgcatctgcagaaacctattacatgttttaatgtaaaagtcctcaaagacact 235
Query: 421 ctgagaaaatgtttctcctttgttctgagaatactggttctcattgaaagcttagatggc 480
||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 234 ctgagaaaatgtttctcctttgttctgagaata--------cattgaaagcttagatggc 183
Query: 481 atagaatggaaagaaaatattatgaacaagctcttaatctggctcttagta 531
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 182 atagaatggaaagaaaatattatgaacaagctcttaatctggctcttagta 132
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 531
Length of database: 931
Length adjustment: 10
Effective length of query: 521
Effective length of database: 921
Effective search space: 479841
Effective search space used: 479841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
