BAC Information

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BAC

Clone NameMSMg01-059H14
Chromosome5 (Build37)
Map Location 149,384,857 - 149,385,198
singlet/doubletsinglet
Overlap genenone
Upstream geneFlt1, LOC100039825, Pomp, Slc46a3, C130038G02Rik, LOC100041819, Slc7a1, LOC100041842, Ubl3
Downstream gene2210417A02Rik, LOC100041869, Katnal1, 8430423G03Rik, 1810059H22Rik, LOC667386, LOC100039964, Hmgb1, EG667410, LOC100040006, Uspl1, 2310047D07Rik, Alox5ap, 6330406I15Rik, 4930588N13Rik, LOC100040037, LOC100040062, 4930434E21Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-059H14.T7 (MSMg01no059_h14.b1)MSMg01-059H14.TJ (MSMg01no059_h14.g1)
ACCAG286143AG286144
length684692
length of high quality
(start - end)
353 (46 - 398)342 (76 - 417)
definitionCHROMAT_FILE: MSMg01no059_h14.b1 PHD_FILE: MSMg01no059_h14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:01:59 2005CHROMAT_FILE: MSMg01no059_h14.g1 PHD_FILE: MSMg01no059_h14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:01:59 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTTCAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGGAGCGCGGA
ATTCAGCAATCTGTCACTCATGGCCTTTTCTCCTTTCTCAGCCATACCAT
CCACACCACTATTGCTGGTGGTGGTGGTCCCTCCTCTTCCTCCTCCTCTT
CCTCCTCCTCTTCCTTTTCTTCTTCTCCTTCCCCGCATCTTCCTTTTAGG
AACGGAGGTATAATGTTGAGGACCAAACCTAGGACCCCACACAAGCTAGA
CTGGAGACCTACCACTAACTGACATCCTTGGAGCCTCAGACTTTGTTTCT
TTGTTTGTTTGCTTGTTTGTTTTGAGAAAATATTGTGTTTGTTGTCTCCG
CACCAAAGGAACCTTCACAAAGGAACACCCCACATCCACACTGTATTCCA
GGGAAGGCACCACACACCCCAGAACCTGGCCTCTCAAGGGTCACTAGGAG
CTCTGCAAGTCTTCCGGTGACAATAGGCATTGTCCTGACCACTCTCTACC
GTCGGATGTTATTTGGACCAGATGAGTTAGACCGGAAAAGAATGCAGAAC
CTTCTCCTCCCATCATTTCTTACAGCCGAGGAATCACGTGTCCAACTCCT
GAGTTATCTTCCACAGTGCAGCTTGGAGTGGCTCTATCTAACTTTGAGCT
TTGAGTCTTTCCTGACTTTTATTGTCCCATTGGA
NNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCTGTATTATTATTATTGTTTGTTG
CACATGGTTATTATGTGGCGAATATGTGTGCACAGAGCATGCATGCATGC
ATCAGTAAGAGGACCATTTGCAGGAGTGGGGTCTCTCCTACCATGGAGGT
CCCAGGATGGAACTTCAGTTGTCAGGTTTGGCGGCAAGCACCTTGCAAGG
GCTGAGCCATCTGGCTACCCCCTAAGGAAACCTTAATTCACCCTTTGGTT
TTGGTTTTTGTTTTTTGTTTTTCCCTCCAAAGGGCTGAGTTCAAGAAGTC
CTGTAGGTATTACACAGAAGTCCCCAGGGGCTGCTGTGGTCACAGCCCAG
GTTCACAGAGAATAGAGACTACCACGCTGACAAGGGAAAAGTGACATGTC
TCTGTGATGTTTCTGCCAACGGCAGACTACACATACAGTGGCAGCGCCCT
TGCAATCGTCACTGGCTCCACTGACTCTGCTTAGTTAGTGCATTCTATGA
TGTTTCCGCAATGATTGTACTGTCTGACAATGCACATCCTCAAAACCTGT
CCCCCCGACATCTCTTGATTGATCCCGGCTCACTGCTATATTGCTAATTG
ACTGCTTATCCCTGAATTATGCTCTTTATTATCTTACATAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no059_h14.g1 MSMg01no059_h14.g1 CHROMAT_FILE:
MSMg01no059_h14.g1 PHD_FILE: MSMg01no059_h14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:01:59 2005
         (342 letters)



>mm_chr5_149384460_149385201
          Length = 742

 Score =  638 bits (330), Expect = 0.0
 Identities = 339/342 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctgtattattattattgtttgttgcacatggttattatgtggcgaatatgtgtgcacag 60
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 739 tctgtattattattattgtttgttacacatggttattatgtggcgaatatgtgtgcacag 680

                                                                       
Query: 61  agcatgcatgcatgcatcagtaagaggaccatttgcaggagtggggtctctcctaccatg 120
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 679 agcatgcatgcatgcatcagtaagaggaccatttgcaggagtggggcctctcctaccatg 620

                                                                       
Query: 121 gaggtcccaggatggaacttcagttgtcaggtttggcggcaagcaccttgcaagggctga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 gaggtcccaggatggaacttcagttgtcaggtttggcggcaagcaccttgcaagggctga 560

                                                                       
Query: 181 gccatctggctaccccctaaggaaaccttaattcaccctttggttttggtttttgttttt 240
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 559 gccatctggctaccccctaaggaaaccttaattcatcctttggttttggtttttgttttt 500

                                                                       
Query: 241 tgtttttccctccaaagggctgagttcaagaagtcctgtaggtattacacagaagtcccc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 tgtttttccctccaaagggctgagttcaagaagtcctgtaggtattacacagaagtcccc 440

                                                     
Query: 301 aggggctgctgtggtcacagcccaggttcacagagaatagag 342
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 aggggctgctgtggtcacagcccaggttcacagagaatagag 398


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 342
Length of database: 742
Length adjustment: 9
Effective length of query: 333
Effective length of database: 733
Effective search space:   244089
Effective search space used:   244089
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)