BAC Information

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BAC

Clone NameMSMg01-059H21
Chromosome5 (Build37)
Map Location 99,670,808 - 99,671,160
singlet/doubletsinglet
Overlap geneRasgef1b
Upstream geneFgf5, 1700007G11Rik, Bmp3, Prkg2, LOC100041680
Downstream geneA930011G23Rik, LOC100040738, LOC666364, LOC100040763, LOC100040774, Hnrpd, 4930524J08Rik, Hnrpdl, Enoph1, BC062109, LOC666417
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-059H21.T7 (MSMg01no059_h21.b1)MSMg01-059H21.TJ (MSMg01no059_h21.g1)
ACCAG286157AG286158
length713727
length of high quality
(start - end)
371 (71 - 441)366 (71 - 436)
definitionCHROMAT_FILE: MSMg01no059_h21.b1 PHD_FILE: MSMg01no059_h21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:02:00 2005CHROMAT_FILE: MSMg01no059_h21.g1 PHD_FILE: MSMg01no059_h21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:02:01 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCGAGCGCGGCGGATTC
TNCGATACTTGCGAACAAGGCACGGGGGATATGGAACCTAAAGAGGCCAC
CACCTGTAGCCAGGCAGGATCACAAGTGAAGGGATAAGGACATGAACCCG
TCACAAAACTTTTAACCCAAAATGTGTCCTATCTAAAAGAAATGCTGGGA
TGGAGCAGAGACAGAAGAAAAGGCCAACTAATAACTGGTCCAACTCGGCC
CATCCCGTAGGGCAAGCACCAATCCTGGACATTATTAATGACACTCTGTT
AAGCTTGCAGGCAGGAGTCTATTTTAACTCTCCTCTGAGAGCCTCCCCCA
GCAGCAGATGGAGGTCAGGGACATTTAAGGAAGAGTTCAGGATGGGGTGT
GGGGGATGGCTGAAGGCCCTGAAGGGCAAAGGAACTTCAAAGGAATATCA
CCCAAGCCAACTAACCTGGACTCCTGGGAGCTCTCGGAGACTGAACCACC
AATCTAAGAACACACATGGGCCTAGAGCATAGCCCCCTTGCACATATGTA
GGAGACCGGCAGTTCATGTTCCGTAGCTGCCTTGCCTAGCCTTACTGAGA
GAGGATGCCCTTACTCTAACAAAGTCTTAATGTGCCAAGGTGCAGTGATT
CCCAAAGGTGTTGAGTTCTCTCACGAAAGAACATCAAATCAACCTTCTCC
TCTTCTTCTTCCT
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCTCTTTCCACGGGGAGCCTGGAACTGTAGA
ACAAATAAGCGCCGCTTCACCACCAGCTCCTCAGGAGACAGTGTGGTTAA
AGCAAAGTAGTGTTGCATTGCCCTTCATCCGCCTGCTTAGTCTGGAGTGA
GCCACTTAGGATGGTTGCAAGTCAGCCTTTGAATGTTGTGATGCAAATAC
TGGGTATTCTACGCTGAACACTCCAGAGAGTTCTTGACTGAATGGGAATA
GGGTGGTCGGTTGTTTGTTTGTTTGTTTGTTTATTGGTTACGGGAGATGA
TATCTGGACACACAACCTTATTCCACGTGGGCAACATATTTAAGGCAGAC
CTGCCTCTCTGGGCTGAATTTCAGTATTCTTTAATTACAACAGGAAAAGG
ATATGTCCTGCCTCCCGATGACCCATAAGGAAATGTTCTCTGGATTACTC
CCGGCATTGATTTAACCTCGTTGCTTTTAGTGTACGTTAATGGTAATTAT
CTCGATACTGCTTACTGTCTCACGTTTAGCCTATATCTTGTCGCCTTGCC
TTTTTTTTATGCCCCATTATTGCGGTGCTATTGCAGCGTTTGTTAGTTAT
TATTTACTTGGACGTATGTCCCCTGTTGCCTTTTTTTTTTGCCCCTATAT
CCCTTTGTTACTTCATCTTTCTGCTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no059_h21.g1 MSMg01no059_h21.g1 CHROMAT_FILE:
MSMg01no059_h21.g1 PHD_FILE: MSMg01no059_h21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:02:01 2005
         (366 letters)



>mm_chr5_99670721_99671486
          Length = 766

 Score =  617 bits (319), Expect = 0.0
 Identities = 347/361 (96%), Gaps = 8/361 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctctttccacggggagcctggaactgtagaacaaataagcgccgcttcaccaccagctcc 60
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 440 ctctttccacggggagcctggaactgtagaacaaataagtgccgcttcaccaccagctcc 381

                                                                       
Query: 61  tcaggagacagtgtggttaaagcaaagtagtgttgcattgcccttcatccgcctgcttag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 tcaggagacagtgtggttaaagcaaagtagtgttgcattgcccttcatccgcctgcttag 321

                                                                       
Query: 121 tctggagtgagccacttaggatggttgcaagtcagcctttgaatgttgtgatgcaaatac 180
           ||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 320 tctggagcgagccacttaggacggttgcaagtcagcctttgaatgttgtgatgcaaatac 261

                                                                       
Query: 181 tgggtattctacgctgaacactccagagagttcttgactgaatgggaatagggtggtcgg 240
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 260 tgggtattctacgctgaacactccggagagttcttgactgaatgggaatagggtggtcgg 201

                                                                       
Query: 241 ttgtttgtttgtttgtttgtttattggttacgggagatgatatctggacacacaacctta 300
           ||||||||||||||        ||||||||||||||||||||||||||||||||||||||
Sbjct: 200 ttgtttgtttgttt--------attggttacgggagatgatatctggacacacaacctta 149

                                                                       
Query: 301 ttccacgtgggcaacatatttaaggcagacctgcctctctgggctgaatttcagtattct 360
           ||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||
Sbjct: 148 ttccacgtgggcaacatatttaaggcagttctgcctctctgggctgaatttcagtattct 89

            
Query: 361 t 361
           |
Sbjct: 88  t 88


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 366
Length of database: 766
Length adjustment: 9
Effective length of query: 357
Effective length of database: 757
Effective search space:   270249
Effective search space used:   270249
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)