Query= MSMg01no059_j02.b1 MSMg01no059_j02.b1 CHROMAT_FILE:
MSMg01no059_j02.b1 PHD_FILE: MSMg01no059_j02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:02:06 2005
(447 letters)
>mm_chr5_16134377_16135223
Length = 847
Score = 806 bits (417), Expect = 0.0
Identities = 435/441 (98%)
Strand = Plus / Plus
Query: 4 ggaattcagttttattacctttattttttgaaataattataatagtttttgtgtttccag 63
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcagttttattagttttattttttgaaataattataatagtttttgtgtttccag 263
Query: 64 tcttccctttagctctttccatacccccctcactctctttcaatttcattgcctcttttc 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tcttccctttagctctttccatacccccctcactctctttcaatttcattgcctcttttc 323
Query: 124 ttttttaattattagatattatatacataataggtttgtacatatttctaatacaatctt 183
||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||
Sbjct: 324 ttttttaattattagatattatatacataattggtttgtacatatttccaatacaatctt 383
Query: 184 ctcagtctatgtattactattgtatatatactattgtgtatattttcagggctgattatt 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ctcagtctatgtattactattgtatatatactattgtgtatattttcagggctgattatt 443
Query: 244 tggtttctttcaaatcaatggtcttttgtcttagtacacatgcatgtgagcaaacacaca 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tggtttctttcaaatcaatggtcttttgtcttagtacacatgcatgtgagcaaacacaca 503
Query: 304 tgaacacaagtgtgagctattcctggttctggaaccctagcaaactatccagtcctaggg 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 caaacacaagtgtgagctattcctggttctggaaccctagcaaactatccagtcctaggg 563
Query: 364 gaactggatttttgtttgctaataactaaaggtatgaggttttgattatttgtttgtttg 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 gaactggatttttgtttgctaataactaaaggtatgaggttttgattatttgtttgtttg 623
Query: 424 tgttttatttttattactttt 444
|||||||||||||||||||||
Sbjct: 624 tgttttatttttattactttt 644
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 447
Length of database: 847
Length adjustment: 10
Effective length of query: 437
Effective length of database: 837
Effective search space: 365769
Effective search space used: 365769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no059_j02.g1 MSMg01no059_j02.g1 CHROMAT_FILE:
MSMg01no059_j02.g1 PHD_FILE: MSMg01no059_j02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:02:06 2005
(468 letters)
>mm_chr5_16295397_16296265
Length = 869
Score = 797 bits (412), Expect = 0.0
Identities = 451/464 (97%), Gaps = 1/464 (0%)
Strand = Plus / Minus
Query: 6 gtgaaaaaa-aaattccaaagcttggatacccatgaacatggcaagtgagatgtctgcac 64
||||||||| || | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 669 gtgaaaaaataagtgccaaagcttggatacccatgaacatggcaagtgagatgtctgcac 610
Query: 65 attgataacttcaatttcaaccagaacataggcactgtgatctatgggggtttcaggctt 124
|||||||||||||| | ||||||||||| |||||| ||||||||||||||||||||| ||
Sbjct: 609 attgataacttcaactccaaccagaacacaggcaccgtgatctatgggggtttcaggttt 550
Query: 125 tagcacagcctagaaaatgaggactcctaattcaggcagagactttattgcaaaaacagg 184
|||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 549 tagcccagcctagaaaatgaggactccgaattcaggcagagactttattgcaaaaacagg 490
Query: 185 catggagttataaaagatgctatgtaatggtctcttctggactctactggcaaacacaga 244
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 489 catggagttataaaagatgccatgtaatggtctcttctggactctactggcaaacacaga 430
Query: 245 tatcctcacgtgtgcttgtgtatacactcacatcgataaaaattagattatgtatatgct 304
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 429 tatcctcacgtgtgcttgtgtatacactcacatggataaaaattagattatgtatatgct 370
Query: 305 tagaagttttccagttggaaagtatgctaaacacatctcagaaatataggcacaatggaa 364
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 369 tagaagttttccagttggaaagtatgctaatcacatctcagaaatataggcacaatggaa 310
Query: 365 gaagtgcagtgtttgacacacaaagaccaaatactcagaagcaataaatatcaacagatg 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 gaagtgcagtgtttgacacacaaagaccaaatactcagaagcaataaatatcaacagatg 250
Query: 425 taaaacagtgataaggtttgaaaatcactgaaatattttattca 468
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 taaaacagtgataaggtttgaaaatcactgaaatattttattca 206
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 468
Length of database: 869
Length adjustment: 10
Effective length of query: 458
Effective length of database: 859
Effective search space: 393422
Effective search space used: 393422
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
