BAC Information

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BAC

Clone NameMSMg01-059J12
Chromosome5 (Build37)
Map Location 84,572,883 - 84,725,717
singlet/doubletdoublet
Overlap geneEpha5
Upstream geneSrd5a2l2, LOC100039608, LOC231368, LOC100039489
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-059J12.T7 (MSMg01no059_j12.b1)MSMg01-059J12.TJ (MSMg01no059_j12.g1)
ACCAG286235AG286236
length701703
length of high quality
(start - end)		469 (44 - 512)497 (72 - 568)
definitionCHROMAT_FILE: MSMg01no059_j12.b1 PHD_FILE: MSMg01no059_j12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:02:08 2005CHROMAT_FILE: MSMg01no059_j12.g1 PHD_FILE: MSMg01no059_j12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:02:08 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(84,725,253 - 84,725,717)(84,572,883 - 84,573,366)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCGCGGAA
TTCTTTATTTGCCCGAAGAGGGATCCCAGGTGCTTAAAACTGTAATTGGG
CCCAGAGGTTACACGTCTTCCTCAATGACAGAGGTAGGGGTCATAGAGCC
ACATACCCCTGGGTATGCTGTGTAAGAATAGGGAGGGAGCAAATCTCACT
CCTACTGGTCTCAAGATGAGATTTTCATGGTTTGACTCTGCCTAGATGTG
ATGTGTTGACCTTGGTCTTATTCCAGGCCATCGCTCTTGTTCCAGACCAC
TACCCTGGACATACCTGCTCCTCAGCTAGGCATGCCCTCGTACCTAGGAG
AGAACCAATTTTTACTTTGTGTCTAAATGCACGTAGTACTAAACTCATCC
CTTAAAACAATGCATTTGTCTGTTCTCCTCTGTGAAGCTTCTATTTACAA
CAAATGATAATTAGGACAGAGACCGACATTGGCCTCCTACAAGGTCAGGG
ATTTTTGTAGAAGAAAGAAAAGAGACTGTTTAAGAATGAGAGTCATGGAT
GGGTACAAGTAAACACTGTCTAATGAACACAGTGCTGATGCACATATGAA
GTCAAAAAATTATGACAACATGCACAAAAACTATACCAGCTTAGAGTTAA
TTTTTTCTGAGATTCTAGGAAGGGTTAGGGTACAGCTTTTTTATAAAAAT
T

AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXATTTATTTGCTTCATTCATTTATTTGCTT
CATTCATTTTGAAACAAAATGTTCCTTATAATGATTCTTGCTAACCTTTT
CTGGGCATTAACCATCACTTTCTTACATTGTAGAAATGTCTACCCTTCTA
GATAAACAAGACTAGACAAGATAGACTCTGGTTCAGCGTAAGCACACAGT
CTCTCCTTTTATTTTTAACCTCATGTCATTGCCAAAACCACTCCTTTCCC
ATGACAGATTTTGCTCCTTCCAAGATCTTAGTATAATTTCATAACCGCTA
ACCTGCTTAGGTAAATATGCTTGGTTTTTGGTTCTTATTTATTGTCTTCT
GTTTGTTTTACCTGCTTATTCCTATCTTCTGGCATTCTTCATAAATTATA
TGGACAGAACCTCATCTACTGAAAGTCAGTATTGCTCCACCTCTTTGAAA
TACCGCTTTGCTTCTGAGCCTATACATGATGTTAGTGAATTCAATGAATA
TATTATTTATATATCTGCAATAAGATAAATAATTTCTGCATTTGGAACAC
GTATATCAGAATTTGAACCATGGTCTTCCTGTTGCTTGGGTAACCCAAAA
TAGGTAATTTCTTTTTCTGCTATTTCCAGAGAACTTTGTTATTGTGCACA
TGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no059_j12.b1 MSMg01no059_j12.b1 CHROMAT_FILE:
MSMg01no059_j12.b1 PHD_FILE: MSMg01no059_j12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:02:08 2005
         (469 letters)



>mm_chr5_84725049_84725917
          Length = 869

 Score =  783 bits (405), Expect = 0.0
 Identities = 450/465 (96%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctttatttgcccgaagagggatcccaggtgcttaaaactgtaattgggcccagag 64
           |||||||||||||||  ||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 669 gaattctttatttgcatgaagagggatcccaggtgcttaaaactgtaattgggcccaggg 610

                                                                       
Query: 65  gttacacgtcttcctcaatgacagaggtaggggtcatagagccacatacccctgggtatg 124
           | |||| | |||||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct: 609 gctacatgacttcctcaatgacagaggtaggggtcgttgagccacatacccctgggtatg 550

                                                                       
Query: 125 ctgtgtaagaatagggagggagcaaatctcactcctactggtctcaagatgagattttca 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 ctgtgtaagaatagggagggagcaaatctcactcctactggtctcaagatgagattttca 490

                                                                       
Query: 185 tggtttgactctgcctagatgtgatgtgttgaccttggtcttattccaggccatcgctct 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 tggtttgactctgcctagatgtgatgtgttgaccttggtcttattccaggccatcgctct 430

                                                                       
Query: 245 tgttccagaccactaccctggacatacctgctcctcagctaggcatgccctcgtacctag 304
           |||||||| ||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct: 429 tgttccaggccactaccctggacatacctgctccacagctaggcatgccctcatacctag 370

                                                                       
Query: 305 gagagaaccaatttttactttgtgtctaaatgcacgtagtactaaactcatcccttaaaa 364
           ||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||
Sbjct: 369 gagagaaccaatttttactttgtgtctaaatgcacgtggtactaaactcattccttaaaa 310

                                                                       
Query: 365 caatgcatttgtctgttctcctctgtgaagcttctatttacaacaaatgataattaggac 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 caatgcatttgtctgttctcctctgtgaagcttctatttacaacaaatgataattaggac 250

                                                        
Query: 425 agagaccgacattggcctcctacaaggtcagggatttttgtagaa 469
           ||||||| |||||||||||||||||| ||||||||||||||||||
Sbjct: 249 agagacccacattggcctcctacaagctcagggatttttgtagaa 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 469
Length of database: 869
Length adjustment: 10
Effective length of query: 459
Effective length of database: 859
Effective search space:   394281
Effective search space used:   394281
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no059_j12.g1 MSMg01no059_j12.g1 CHROMAT_FILE:
MSMg01no059_j12.g1 PHD_FILE: MSMg01no059_j12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:02:08 2005
         (497 letters)



>mm_chr5_84572670_84573566
          Length = 897

 Score =  820 bits (424), Expect = 0.0
 Identities = 469/484 (96%)
 Strand = Plus / Plus

                                                                       
Query: 14  attcatttatttgcttcattcattttgaaacaaaatgttccttataatgattcttgctaa 73
           ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||
Sbjct: 214 attcatttatttgcttcattcgttttgaaacaaaatgttccttataatgattcttgataa 273

                                                                       
Query: 74  ccttttctgggcattaaccatcactttcttacattgtagaaatgtctacccttctagata 133
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 274 ccttttctgggcattaaccatcactttcttacattgtagaaatgtctagccttctagata 333

                                                                       
Query: 134 aacaagactagacaagatagactctggttcagcgtaagcacacagtctctccttttattt 193
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 334 aacaagactagacaagatagactctggttcagtgtaagcacacagtctctccttttattt 393

                                                                       
Query: 194 ttaacctcatgtcattgccaaaaccactcctttcccatgacagattttgctccttccaag 253
           |||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 ttaacctcatgtcattgttaaaaccactcctttcccatgacagattttgctccttccaag 453

                                                                       
Query: 254 atcttagtataatttcataaccgctaacctgcttaggtaaatatgcttggtttttggttc 313
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 454 atcttagtataatttcataaccactaacctgcttaggtaaatatgcttggtttttggttc 513

                                                                       
Query: 314 ttatttattgtcttctgtttgttttacctgcttattcctatcttctggcattcttcataa 373
            ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct: 514 ctatttattgtcttctgtttgttttacctgcttattcctatcttctggcattctgcatga 573

                                                                       
Query: 374 attatatggacagaacctcatctactgaaagtcagtattgctccacctctttgaaatacc 433
           |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 574 attatatggacagagcctcatctactgaaagtcagtattgctccacccctttgaaatacc 633

                                                                       
Query: 434 gctttgcttctgagcctatacatgatgttagtgaattcaatgaatatattatttatatat 493
            |||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct: 634 tctttgcttctgagcctatacatgatgttagtgaattcaatgagtatattatttacatat 693

               
Query: 494 ctgc 497
           ||||
Sbjct: 694 ctgc 697


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 497
Length of database: 897
Length adjustment: 10
Effective length of query: 487
Effective length of database: 887
Effective search space:   431969
Effective search space used:   431969
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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