Query= MSMg01no059_n09.b1 MSMg01no059_n09.b1 CHROMAT_FILE:
MSMg01no059_n09.b1 PHD_FILE: MSMg01no059_n09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:02:26 2005
(576 letters)
>mm_chr5_47602180_47603155
Length = 976
Score = 1075 bits (556), Expect = 0.0
Identities = 571/576 (99%)
Strand = Plus / Minus
Query: 1 atttgaatagagagagaagcaagggtagaatacgaatggtaaaaactctaacccaagttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 776 atttgaatagagagagaagcaagggtagaatacgaatggtaaaaactctaacccaagttt 717
Query: 61 ttaacatagtgagaaaactgcattaaaactggcttcccttgatgatcatggaagaggttt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 716 ttaacatagtgagaaaactgcattaaaactggcttcccttgatgatcatggaagaggttt 657
Query: 121 atgatctagtcctgtgatttaatatgagcaggtccatgcttactttctcattacctgctg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 656 atgatctagtcctgtgatttaatatgagcaggtccatgcttactttctcattacctgctg 597
Query: 181 cacgggaagtggaaataacttcagctcaaagagaacaagggccaagggtaatggcaaatg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 596 cacgggaagtggaaataacttcagctcaaagagaacaagggccaagggtaatggcaaatg 537
Query: 241 ttttataatatattaacgtgttgctaatttgcatctgtgtctataaatgcaggactaggg 300
|||||||| | | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 536 ttttataaaaaacaaacgtgttgctaatttgcatctgtgtctataaatgcaggactaggg 477
Query: 301 atggaaaaccctttatggactgaattaccttccctgacccagcaagagattctctatggt 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 476 atggaaaaccctttatggactgaattaccttccctgacccagcaagagattctccatggt 417
Query: 361 tttgccttccagagatctttaaattcacttttagctctgtataatatgcacggaggaaca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 tttgccttccagagatctttaaattcacttttagctctgtataatatgcacggaggaaca 357
Query: 421 cagtggaaacagcactttttgacctctacgtggttctgggcatcatcctcatctgagaga 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 cagtggaaacagcactttttgacctctacgtggttctgggcatcatcctcatctgagaga 297
Query: 481 atgctagaattcaggtacagcattttctctaccttcccatgtttactcatgttcacttta 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 atgctagaattcaggtacagcattttctctaccttcccatgtttactcatgttcacttta 237
Query: 541 gacattctcactggccaatgcaatgatatcccttag 576
||||||||||||||||||||||||||||||||||||
Sbjct: 236 gacattctcactggccaatgcaatgatatcccttag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 576
Length of database: 976
Length adjustment: 10
Effective length of query: 566
Effective length of database: 966
Effective search space: 546756
Effective search space used: 546756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no059_n09.g1 MSMg01no059_n09.g1 CHROMAT_FILE:
MSMg01no059_n09.g1 PHD_FILE: MSMg01no059_n09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:02:26 2005
(553 letters)
>mm_chr5_47485494_47486450
Length = 957
Score = 1017 bits (526), Expect = 0.0
Identities = 549/558 (98%), Gaps = 5/558 (0%)
Strand = Plus / Plus
Query: 1 tttc-aaaaacagtgaaccttttgaggtttccatatcagatatcctgcatatgagatatc 59
|||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 200 tttcaaaaaacagtgaaccttttggggtttccatatcagatatcctgcatatgagatatc 259
Query: 60 tacattacaatttatacagtagcaaaactacatgtatgaaatagtaatgaaataatttta 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 tacattacaatttatacagtagcaaaactacatgtatgaaatagtaatgaaataatttta 319
Query: 120 tgtttgggggtccacacaatatcaagaactatattagagttgcaactttaggaaagttga 179
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 320 tgtttgggggtccacacaatatcaagaactatattagagttgcagctttaggaaagttga 379
Query: 180 taaccactgatctagaggaatttaatcatgagaggggaagtaagaagagtgagaagtata 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 taaccactgatctagaggaatttaatcatgagaggggaagtaagaagagtgagaagtata 439
Query: 240 ttggttcattaaggaccagaagaaaaaacatgttatggcttatatgccacatctaaagaa 299
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 440 ttggttcattaaggaccagaagaaaaaacatgttatggcttatatgccacgtctaaagaa 499
Query: 300 gttttattaataaaaaaatcacaaaaagtccaaaataattactctatgtttatataagga 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 gttttattaataaaaaaatcacaaaaagtccaaaataattactctatgtttatataagga 559
Query: 360 tgcctttttgagaaagacaagaatgaattcccaagctggtgtgagaatgacttgagatga 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 tgcctttttgagaaagacaagaatgaattcccaagctggtgtgagaatgacttgagatga 619
Query: 420 aaaacattgtatgctaaattaaaatgtttcccataggcatttaaacttcttacatagttt 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 aaaacattgtatgctaaattaaaatgtttcccataggcatttaaacttcttacatagttt 679
Query: 480 tacatcaatcatgcctacatgtattacttatcatcctatgcatgtatactgt-tg---cc 535
|||||||||||||||||||||||||||||||||||||||||||| ||||||| || ||
Sbjct: 680 tacatcaatcatgcctacatgtattacttatcatcctatgcatgcatactgtctgtcgcc 739
Query: 536 tctgctagatcccttaag 553
||||||||||||||||||
Sbjct: 740 tctgctagatcccttaag 757
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 553
Length of database: 957
Length adjustment: 10
Effective length of query: 543
Effective length of database: 947
Effective search space: 514221
Effective search space used: 514221
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
