BAC Information

Click to search

BAC

Clone NameMSMg01-060C09
Chromosome5 (Build37)
Map Location 66,141,685 - 66,142,001
singlet/doubletsinglet
Overlap genenone
Upstream geneKlf3, Tlr1, Tlr6, 9130005N14Rik, Tmem156, Klhl5, Wdr19, Rfc1, Klb, Rpl9, Lias, Ugdh, 1110003E01Rik, 4930589O11Rik, Hip2, 9030416H16Rik
Downstream gene1700022K14Rik, LOC384261, B3bp, LOC100041809, Rhoh, LOC626641, EG666827, Chrna9, 9130230L23Rik, BC013481, LOC626714, LOC666854, LOC100042394, Nsun7, Apbb2, Uchl1, LOC100041876, 3732412D22Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-060C09.T7 (MSMg01no060_c09.b1)MSMg01-060C09.TJ (MSMg01no060_c09.g1)
ACCAG286660AG286661
length708817
length of high quality
(start - end)
367 (46 - 412)---
definitionCHROMAT_FILE: MSMg01no060_c09.b1 PHD_FILE: MSMg01no060_c09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:02:49 2005CHROMAT_FILE: MSMg01no060_c09.g1 PHD_FILE: MSMg01no060_c09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:02:49 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCAGGACACCCAAGGCTACACAGAGGAAATTATGCCAAAATAATAA
TAATAATAATTTAAATTTAGGATATGTAACATCCCAAGGTTTCACTTCTG
TGTCCCAGTTTCTAGATGATGCTGAGGGATACAACCGAGCAAAGTAAGAG
AGCAAAAAGCAAAGGAAGTCATCAAACCAGGGCCGAGTGCTGGAGGAGCC
AATCCAGGAGCCCTGGCTGAAGCTAAGGAAGGGCCAGCAAGCCAGCTTGA
GAGGTAAAAGAGGCCTGACTCTGTCAGGCTCCAACCTCCATGCTTACACA
CAAGACAAGACACGTAAGTGTAGATACATAAATGTAATACAACATCTTCA
GCAAGCTGATCGTCACACCAACGTCCAGGAGCCGGAGCTGTGTGTGCAGA
ACGGCATGAAGATGGAGTTCTCAGGGGTTGCAAGATGGAGAAGACTTCAG
AGTGTGGCCAGCGGATCAGTGCAAACCAGGAGGTTGGTTGGAGACAGCGG
CTATCGTTCTATAATTTAAGGCTCAGGAACAGACAATAGTTGGGATTTTT
TTTTTTTTTTTGGAATTGGAATATGTTCCCGAAATTCCAGGAGGTGGCCC
ATTTTTCTTATTTAGGGAGATATAAAATATCTACAGAATATAATACCTTA
TTACGCTG
TTGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTTCTCTATAAGAGAAGAGAACTTGTGTGGG
GCAGGGAGAACCTGTGAGATGTGGAGCGCTCAGATGGTAGATTGGGGGGG
ATGTAATTTTTCTANCNNCCTTTTTCTCCCCTCCCCCCTTCCTTCCTCCC
CCCCCCCCTCCCCCCCCCTCCCTCTTCCTTCTTTTTTTATTCTTCCTCTT
CTTTTTTTTTCCCTATTTCTTCCCTTCCCCTTTCTTTCCCCTTCCTCCTC
CCCCTCCCCCTCTCTTCTTTTTCCCCCCCCTTTTCCCCCCTCCCTCCTAA
TTCTCTTCATCTTCCCCCCTCCCCTTCTTCTCTCTCTCTTTTTTTTTTTT
CTCTTTATCTCCCCCCCTCTTTTTTTTCGACACCCCTTTTTTACACCCCC
TCCCCTTTCCTCTTCTTTTTCCCCCCCTCTCCTCTTCTTTTTTTTTCTCT
CCTTCTTCTCCTCCTTTCTCTCTCCCGTTACCCCTTCTCTCCCTTCTTTC
CCCCCTCCCCTCCCTTTTATTCTTTCCCCCCCCCCCTCCCCTCCCCTTCT
TCCCCCCCTTTCTCTCTCTTTTTTTCTCTTTTTCTTCTCCTCTTCCCTTT
TTCCTTTTCTCTTCTTTCTCCCTCCTCTTTCTCCTCCTTCCCCTTATCCT
CCCCCCCCCTCCTCTTCCTCCCTCTCCTTCTTCTCCTCTCTCCTCTTCAT
TCCTCTCTTTTCTCTCCTCTCTCCCCTCCCTCTTTTCTCTTCCTTTTCTT
TCCTCCTTTTCTTACCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no060_c09.b1 MSMg01no060_c09.b1 CHROMAT_FILE:
MSMg01no060_c09.b1 PHD_FILE: MSMg01no060_c09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:02:49 2005
         (367 letters)



>mm_chr5_66141411_66142177
          Length = 767

 Score =  590 bits (305), Expect = e-173
 Identities = 314/317 (99%)
 Strand = Plus / Minus

                                                                       
Query: 48  aataataataataataatttaaatttaggatatgtaacatcccaaggtttcacttctgtg 107
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 591 aataataataataataatttaaacttaggatatgtaacatcccaaggtttcacttctgtg 532

                                                                       
Query: 108 tcccagtttctagatgatgctgagggatacaaccgagcaaagtaagagagcaaaaagcaa 167
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 531 tcccagtttctagatgatgctgagggatacaaccgagcaaagtaagagagcaaaaagcaa 472

                                                                       
Query: 168 aggaagtcatcaaaccagggccgagtgctggaggagccaatccaggagccctggctgaag 227
           ||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct: 471 aggaagtcatcaaaccagggccgagtgctggaggagccagtgcaggagccctggctgaag 412

                                                                       
Query: 228 ctaaggaagggccagcaagccagcttgagaggtaaaagaggcctgactctgtcaggctcc 287
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 ctaaggaagggccagcaagccagcttgagaggtaaaagaggcctgactctgtcaggctcc 352

                                                                       
Query: 288 aacctccatgcttacacacaagacaagacacgtaagtgtagatacataaatgtaatacaa 347
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 aacctccatgcttacacacaagacaagacacgtaagtgtagatacataaatgtaatacaa 292

                            
Query: 348 catcttcagcaagctga 364
           |||||||||||||||||
Sbjct: 291 catcttcagcaagctga 275


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 367
Length of database: 767
Length adjustment: 9
Effective length of query: 358
Effective length of database: 758
Effective search space:   271364
Effective search space used:   271364
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)