BAC Information

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BAC

Clone NameMSMg01-060J02
Chromosome5 (Build37)
Map Location 79,470,061 - 79,470,327
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039398, Mthfr-ps1, EG384187
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-060J02.T7 (MSMg01no060_j02.b1)MSMg01-060J02.TJ (MSMg01no060_j02.g1)
ACCAG286981AG286982
length752716
length of high quality
(start - end)
267 (75 - 341)---
definitionCHROMAT_FILE: MSMg01no060_j02.b1 PHD_FILE: MSMg01no060_j02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:03:19 2005CHROMAT_FILE: MSMg01no060_j02.g1 PHD_FILE: MSMg01no060_j02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:03:19 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAGAGAAGCCGCGG
AATTCAAATATTGTTCCCACTGAGCTTTATAAAGATTTATTTCCATTAAT
GTTAATTTTCATGTGTATGTCTTTGTATGTGCACCCACCTCTGCCTATAA
AGGCCAGATCTTAATGCTTTCAAATCAATTGCATTTTACTTTTAACTTTC
TCAGTTTCAATACAAATAATAAAATGTGCAATAAGAAACCTAATTTCTAG
TCAGAGAAGCAAATTGAAAGATTGACTACAATTTCTAATTATTTCTATGG
CACTAAATAGGAATTGCATATTTATATAACTAGCAAATGCATAAAATGGA
GACTCAAAAATACTTTCTAAAAATAGAACATTTTGAAATTCTAGTATTTT
GAGTTTAGTTTCATCAAAAATATAAATTACTTTATTAAATTTACCTGAGA
GATATATTATATTTCTCATGTATATACATTTGCATTTTATTATGTTACAT
ATTAAATATAAATTACACTTTACCAAACATTATAACTGAAAGATGGATAT
AACCGGACATAATGTAACACTTCACCAAAACAAAAGTGGGTAAAAACCCC
CATCAACATTACATTCCCCCCCTCCAAACCCTAAACCCTCGTTCCCAATA
ATACAACACACACCAATACATAGTCAAAAAACTTCTTTACCCCCTACTTC
CCCTTTCNTTCCAACTTTTTCCTAATAAAATCCTCTCATATTAATACAAC
AA
CAAGAACTGAAAGGCCGNNANANCCCCCTTTGACAAAGCTTTGNNNNNNN
CCCGTTACAACAAAAGCCGGNGNGNGNNGNGNNNGNNNGNNNNGNNNNGN
NNNNTTTTCCCCCCCCCCCTCCTTGNGGNNTTTTNGTTNNTCCCGCCCCT
GTGGGGGGGGCGGGCCCCGCCCGCTTTTTTCCCCCCCCCCTTCGCGTGAT
TCTGTTGCTGCTCGGTCCGGCTCGCCCGCCCTCTTTTTTTTTCGGCGGGC
GCCGTGGCCCGCTCGCTCCCTTTTTTCTGCNCCCCCCCCCGCCGGCCGGC
TTTTTAATAAATTTCAAAGAAAAACAAGAACCCCGCACAAACCCATTTTT
TTTTTCCCCCCCCCACCAAGACAAAAAGTGGTAATCAAAGTAATAAGCCT
TTACTATGTTCCAACAGAAGAAAAAGGACAAAACACCCAGTGTGATAGAG
CCAGAATGAAGGACGCATGAAAGGGGGAGTGGGAAAGTTAAGAGATGGAA
GGACTGGGCCATGTGAGGTACGCTCTTAATTGATTAGGATAAACACGCAA
TATATAACAACCTCAAAGAGGCACCCGGCCAAAGACCTTGTGCGAAAGCA
CACCCATGGACCGCAGAAACCCATCTCACGATTGGCCACCGCTTGCTCGT
CGCCGCCATTAGTGCCCGCCGAAGGCCAATTTTTTTTTAAAACAGAAGAG
AATGAGACAAAACGCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no060_j02.b1 MSMg01no060_j02.b1 CHROMAT_FILE:
MSMg01no060_j02.b1 PHD_FILE: MSMg01no060_j02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:03:19 2005
         (267 letters)



>mm_chr5_79469861_79470527
          Length = 667

 Score =  485 bits (251), Expect = e-142
 Identities = 263/267 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctttataaagatttatttccattaatgttaattttcatgtgtatgtctttgtatgtgcac 60
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctttataaagatttatttctattaatgttaattttcatgtgtatgtctttgtatgtgcac 260

                                                                       
Query: 61  ccacctctgcctataaaggccagatcttaatgctttcaaatcaattgcattttactttta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccacctctgcctataaaggccagatcttaatgctttcaaatcaattgcattttactttta 320

                                                                       
Query: 121 actttctcagtttcaatacaaataataaaatgtgcaataagaaacctaatttctagtcag 180
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 actttctcagtttcaatagaaataataaaatgtgcaataagaaacctaatttctagtcag 380

                                                                       
Query: 181 agaagcaaattgaaagattgactacaatttctaattatttctatggcactaaataggaat 240
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agaagcaaattgatagattgactacaatttctaattatttctatggcactaaataggaat 440

                                      
Query: 241 tgcatatttatataactagcaaatgca 267
           ||||||||||||||| |||||||||||
Sbjct: 441 tgcatatttatataaatagcaaatgca 467


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 267
Length of database: 667
Length adjustment: 9
Effective length of query: 258
Effective length of database: 658
Effective search space:   169764
Effective search space used:   169764
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)