Query= MSMg01no060_j11.b1 MSMg01no060_j11.b1 CHROMAT_FILE:
MSMg01no060_j11.b1 PHD_FILE: MSMg01no060_j11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:03:21 2005
(670 letters)
>mm_chr5_76441338_76442407
Length = 1070
Score = 1195 bits (618), Expect = 0.0
Identities = 655/668 (98%), Gaps = 2/668 (0%)
Strand = Plus / Plus
Query: 5 gaattccctatttccgatatcaaatcaaaagtaactgtttcatatattagatgtaattat 64
|||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 gaattccctaggtctgatatcaaatcaaaagtaactgtttcatatattagatgtaattat 262
Query: 65 ggcaatgattttaacacagtaaaatggtgattcttatctttcaaaatattctggatacca 124
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 ggcaatgatttcaacacagtaaaatggtgattcttatctttcaaaatattctggatacca 322
Query: 125 ttcgtaaatggattctagttctaaacagttgatactacttgcaaatgaattatcttggaa 184
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 ttcgtaaatggattccagttctaaacagttgatactacttgcaaatgaattatcttggaa 382
Query: 185 gtctaaatcaagcaatgactcagccaatgaacatacttggtgcagacaatctttctttca 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 gtctaaatcaagcaatgactcagccaatgaacatacttggtgcagacaatctttctttca 442
Query: 245 tttttgaaacctacccaatgtatttattataatgtgcttaaagtacatgtgcacatttga 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 tttttgaaacctacccaatgtatttattataatgtgcttaaagtacatgtgcacatttga 502
Query: 305 ggactg--aaaaaaacccaccaatctctactggttaaaaatattttgaaatttttttatt 362
|||||| ||||||| |||||||||||||||||||||||||| ||||||||||||| |||
Sbjct: 503 ggactgaaaaaaaaaaccaccaatctctactggttaaaaatactttgaaattttttgatt 562
Query: 363 tgcatttatttgttcacaaatgcatgctaacacaaataagatggtgcttaggaaatgcct 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 tgcatttatttgttcacaaatgcatgctaacacaaataagatggtgcttaggaaatgcct 622
Query: 423 gtagaacactcgtccgggtgattgatagtaagaatggtttgctggtgctggagagatggc 482
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 623 gtagaacactcgtccgggtgattgatagtaagaatggtttgttggtgctggagagatggc 682
Query: 483 taagaggttgagggtgcttgctgctttgccctggacctgggatctgatgtcgtcttctgg 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 taagaggttgagggtgcttgctgctttgccctggacctgggatctgatgtcgtcttctgg 742
Query: 543 cctctgctggcacctgcctacatgtggcgtacacagacacaaaaataaaaataactcttt 602
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 743 cctctgctggcacctgcctacacgtggcgtacacagacacaaaaataaaaataactcttt 802
Query: 603 ggagactcatttgtagataaaggggaaactgtagagcaggaagagggactccatcacaat 662
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 803 ggagactcatttgtagataaaggggaaactgtagagcaggaagagggactccatcacaat 862
Query: 663 atgtgccc 670
|| |||||
Sbjct: 863 atatgccc 870
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 670
Length of database: 1070
Length adjustment: 10
Effective length of query: 660
Effective length of database: 1060
Effective search space: 699600
Effective search space used: 699600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no060_j11.g1 MSMg01no060_j11.g1 CHROMAT_FILE:
MSMg01no060_j11.g1 PHD_FILE: MSMg01no060_j11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:03:21 2005
(640 letters)
>mm_chr5_76560775_76561815
Length = 1041
Score = 1060 bits (548), Expect = 0.0
Identities = 580/592 (97%), Gaps = 4/592 (0%)
Strand = Plus / Minus
Query: 53 gcagcccaggcagaact---gggcaagcaatatcttggggttactgacagggaaaacaga 109
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct: 1041 gcagcccaggcagacctggggggcaagcaatatcttggggttactgacagggaaaacaga 982
Query: 110 caaactactgtagagggctgatatcagatcagctctaatgttttaagacttattataaac 169
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 981 caaactactgtagagggctgatatcagatcagctctaatgttttaagacttattataaac 922
Query: 170 ataaaggttttgtgtcttttatttgggaactacatggtctaaggtggggtagaaaccccc 229
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 921 ataaaggttttgtgtcttttatttgggaactacatggtctaaggtggggtagaaaccccc 862
Query: 230 aaataatatttactatatcaaatcacagctagctgaggggtctcttcctctacctgaatg 289
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 861 aaataatatttactataacaaatcacagctagctgaggggtctcttcctctacctgaatg 802
Query: 290 tcattcatgggtaggcaagaagccc-ttttggttcagattactagcagctttcagtttcc 348
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 801 tcattcatgggtaggcaagaagccctttttggttcagattactagcagctttcagtttcc 742
Query: 349 ctcagggtctggcatcaaggactggtggcagtggacaagcagaaacagtggcaagtggcg 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ctcagggtctggcatcaaggactggtggcagtggacaagcagaaacagtggcaagtggcg 682
Query: 409 ccctgtccaacagtctggtgtagaccctggctatggaggcccctgggcccttggcaacag 468
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 681 ccctgtccaacagtctggtgtagaccctggctatggaggcccctgggaccttggcaacag 622
Query: 469 cagtgttaaagttctcagcttggtgtctgagagccttggtcctgaagatttgacagcttt 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cagtgttaaagttctcagcttggtgtctgagagccttggtcctgaagatttgacagcttt 562
Query: 529 ctcatactcctctagcaaccacagagtacagactggttctcttctctggctccttgtggc 588
|||||||||||||||||| |||||||||||||| |||| |||||||||||||||||||||
Sbjct: 561 ctcatactcctctagcaatcacagagtacagacaggttttcttctctggctccttgtggc 502
Query: 589 cgtttatcaaccctcagctttcttgtctgcaccacttcacttttttgctgat 640
||||||||| |||| |||||||||||||||||||||||||||||||||||||
Sbjct: 501 cgtttatcagcccttagctttcttgtctgcaccacttcacttttttgctgat 450
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 640
Length of database: 1041
Length adjustment: 10
Effective length of query: 630
Effective length of database: 1031
Effective search space: 649530
Effective search space used: 649530
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
