BAC Information

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BAC

Clone NameMSMg01-060K12
Chromosome5 (Build37)
Map Location 112,701,002 - 112,809,414
singlet/doubletdoublet
Overlap geneTpst2, Tfip11, 2810002G02Rik, Hps4, EG625424
Upstream geneTtc28, Pitpnb, Mn1, A230057G18Rik, Cryba4, Crybb1
Downstream geneAsphd2, Sez6l, EG625464, Myo18b, Adrbk2, Crybb2, LOC100042920, Crybb3, 2900026A02Rik, Gm854, Rutbc2, Aym1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-060K12.T7 (MSMg01no060_k12.b1)MSMg01-060K12.TJ (MSMg01no060_k12.g1)
ACCAG287049AG287050
length741713
length of high quality
(start - end)		109 (68 - 176)125 (162 - 286)
definitionCHROMAT_FILE: MSMg01no060_k12.b1 PHD_FILE: MSMg01no060_k12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:03:26 2005CHROMAT_FILE: MSMg01no060_k12.g1 PHD_FILE: MSMg01no060_k12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:03:26 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(112,701,002 - 112,701,109)(112,809,291 - 112,809,414)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCTATTTCCTTTCTGTCTTCCTCCCTAGTTCTCCACACTCGACCTCC
TATGATGTACGAGTGCAGATCTTTTCATCTGTTTCCCTTTTGATATTATA
GTCCAGGCTGGCTTTGCATTTTTTGCGTAGCCAAGGATTATTTTTAACTT
TTGATCCTCCTGCCTCCACCTCCTGAATGGAGGGATTGAAGATGTGCTCT
CTCGAAGCAGAGCCCCACAGTCCTGAGCCTTATTGATTCGACTGCCACAC
TCTCCTAGCTCCTTTGTCCTGCTGATATCCCGATAGTCCCTACTAAATAG
ACTTTTTTATTCCCCTGGAACTGACTCCAACGCCTTGCTGTTTGTCTTCT
ACCTCCTTTTCTCCCTCCCCCTATTCTTCTACGATGCCTCCTTTCTTTCT
TATCCCCCCTCTCCTTTACTCTTTTTCTCCCTCCCCCTCTCTCTCTTTCC
ACGTCTATCTCCCCTTTCCTTTCTCCCCCACCTTTTTCTCTCTCCTCCCC
ATTTATTCCAACTCCTTCATCCCCCTTATACCCCCTTTTCCGTTTCCTTT
CCTTCCATTCTTCCACCTACTTCATTCCTCATCCCTTCTTACTCTGCCTC
TCTCCACCCTTTACCATTTACTTCTGTTCTCCCCCTCCATCCCCTTTTCT
CCATACTTTACCCTCCCCCCTTTACCCTTTATCCCCTCCTT

NCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTGTGTTAGACCTGGGGTCAG
ATGTGAGGGGCTCTACAGACCTGAGGGGAGTAACTCCCGAGGTTCTTTCT
GGTGTAAGTGGCAAACAGCTTACACTTAAAGCCATAAAATCATCATCATC
ATCACTGTCAATGGGAAGCAGTTCTCTGCTTCAGCTAACAGGAAGTCTGT
CCATCTGGCTGTGATCAGGAATGGGGAGGGAGGAGACTTTACCTGAATAA
CCTCCCGACATTACCCATCCGCACTCCCGAGAGGCATCCTATCACCAGGG
AATCCCCCCTACCTGAGATCCTGACCCACCATTGAAGGCAACTAAGATAG
CCATGGTCTTCTGTGACCACCTCTTAGAGAAGTTGCTCAACCTGCCGCGA
GTGATGCCTTTCACGAGATAACTGCAGGTCCGACGCACTGCGCCTATCAG
CCACCGTGCTATATGTAACTTCAAGAGCACTCTCCTTAAAAACCCCGTGA
GTGTCGCCCTTTCTTTCTCTTGCCTCCCTCGCTCCTGTTCTTTCTGTTGC
AAACATCCGCACCCCGGCTCTTGGCCTCGCTATTCCTCCCTCGTTTTCTG
ACTCGCGGGATGACAAAGGTTAAAATTTTCGGCCGCCAAAGATCCCTCTT
TTCCTCTTCACCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no060_k12.b1 MSMg01no060_k12.b1 CHROMAT_FILE:
MSMg01no060_k12.b1 PHD_FILE: MSMg01no060_k12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:03:26 2005
         (109 letters)



>mm_chr5_112700802_112701310
          Length = 509

 Score =  201 bits (104), Expect = 9e-57
 Identities = 107/108 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtcttcctccctagttctccacactcgacctcctatgatgtacgagtgcagatcttttca 60
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 201 gtcttcctccctagttctccacactcgacctcctatgatgtatgagtgcagatcttttca 260

                                                           
Query: 61  tctgtttcccttttgatattatagtccaggctggctttgcattttttg 108
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tctgtttcccttttgatattatagtccaggctggctttgcattttttg 308


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 109
Length of database: 509
Length adjustment: 8
Effective length of query: 101
Effective length of database: 501
Effective search space:    50601
Effective search space used:    50601
X1: 6 (11.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 6 (12.4 bits)
S2: 6 (12.3 bits)

Query= MSMg01no060_k12.g1 MSMg01no060_k12.g1 CHROMAT_FILE:
MSMg01no060_k12.g1 PHD_FILE: MSMg01no060_k12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:03:26 2005
         (125 letters)



>mm_chr5_112809091_112809615
          Length = 525

 Score =  217 bits (112), Expect = 2e-61
 Identities = 121/124 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   caaacagcttacacttaaagccataaaatcatcatcatcatcactgtcaatgggaagcag 60
           |||||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct: 324 caaacagcttacacataaagccataaaattatcatcatcatcactgtcaatggcaagcag 265

                                                                       
Query: 61  ttctctgcttcagctaacaggaagtctgtccatctggctgtgatcaggaatggggaggga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ttctctgcttcagctaacaggaagtctgtccatctggctgtgatcaggaatggggaggga 205

               
Query: 121 ggag 124
           ||||
Sbjct: 204 ggag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 125
Length of database: 525
Length adjustment: 8
Effective length of query: 117
Effective length of database: 517
Effective search space:    60489
Effective search space used:    60489
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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