BAC Information

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BAC

Clone NameMSMg01-060N11
Chromosome5 (Build37)
Map Location 59,223,243 - 59,223,828
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041385
Downstream geneLOC100041396, LOC666499, EG625870, LOC100041425
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-060N11.T7 (MSMg01no060_n11.b1)MSMg01-060N11.TJ (MSMg01no060_n11.g1)
ACCAG287191AG287192
length709719
length of high quality
(start - end)
635 (39 - 673)586 (79 - 664)
definitionCHROMAT_FILE: MSMg01no060_n11.b1 PHD_FILE: MSMg01no060_n11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:03:40 2005CHROMAT_FILE: MSMg01no060_n11.g1 PHD_FILE: MSMg01no060_n11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:03:40 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTT
TGTTCAGCTTTGAGCCCCATTTTTTAATGGGGTTATTTGAGTTTCTGAAG
TCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCCCTATCTGA
TTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTTTTTGTCT
TATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCATTAGGTCC
CATTTGTCAATTCTCGATCTTACAGCACAAGCCATTGCTGTTCTGTTCAG
GAATTTTTCCCCTGTGCCCATATCTTCAAGGCTTTTCCCCACTTTCTCCT
CTATAAGTTTCAGTGTCTCTGGTTTTATGTGAAGTTCCTTGATCCACTTA
GATTTGACCCCACCACAAGGAGATAAGTATGGATCGATTCGCATTCTTCT
ACACGATAACAACCAGTTGTGCCAGCACCAATTGTTGAAAATGCTGTCTT
TCTTCCACTGGATGGTTTTAGCTCCCTTGTCGAAGATCAAGTGACCATAG
GTGTGTGGGTTCATTTCTGGGTCTTCAATTCTATTCCATTGGTCTACTTG
TCTGTCTCTATACCAGTACCATGCAGTTTTTATCACAATTGCTCTGTAGT
AAAGCTTTAGGTCTGGCATGGTGATTCTGCCAGAAGTTCTTTTATCCTTG
AGAATACTT
NTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXAAAAGTGTGTATAGAAACCCAG
ATGTTATTGGCTTGAAAGATTTAGTATGATAATTTGGCAACGAAGCCTGT
GTAATCACTGATTTAGCATATAAAATTGGCCCAGAAAATATTTATATTAA
ACAAAACACCCTTCTAAAGTATCTATATCCAATTAAATGACTTTTTTTTT
CATTTCTGTTTGATACTGATGTTGCAAATTGAATCCTTTCTTTGCAAGAA
AGAGTTCCAATCAATTAGGACAAAGCATGCCTATGTGGTCAGATTTAATT
TACACAGATGCCGGATTCTTCGGGTATTTCAGGTGAGTTGTATCATGCTA
TACATAGTCTGTTTGCTTCACCAATATAAACTCTGGCACTAGATTTAAGC
TTGTTTTGTTAAACCTCAGGTTTTTAAGGTGGTAATGTATTCAGCCTGCA
AATTTCCACAGCAAGAAATATAAATGAGTTGTTATGTCATCAGAAGAATT
CTAATAATGTTAGGAGACTTTGTATTTATTACACCAATATGTATGAAAGT
TTCCAACTGGAAAAAGTAAAGAATTCTGGTTTGTTTTCTGTTTGTTTTTT
GCCTTTTACTTTGTCATTAGTCTTTTACTTAGTTCATCTAAGTATGTATT
TCCAGTTTATCTGACAAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no060_n11.g1 MSMg01no060_n11.g1 CHROMAT_FILE:
MSMg01no060_n11.g1 PHD_FILE: MSMg01no060_n11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:03:40 2005
         (586 letters)



>mm_chr5_59223043_59224028
          Length = 986

 Score = 1087 bits (562), Expect = 0.0
 Identities = 580/586 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaaagtgtgtatagaaacccagatgttattggcttgaaagatttagtatgataatttggc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 786 aaaagtgtgtatagaaacccagatgttattggcttgaaagatttagtatgataatttggc 727

                                                                       
Query: 61  aacgaagcctgtgtaatcactgatttagcatataaaattggcccagaaaatatttatatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 aacgaagcctgtgtaatcactgatttagcatataaaattggcccagaaaatatttatatt 667

                                                                       
Query: 121 aaacaaaacacccttctaaagtatctatatccaattaaatgactttttttttcatttctg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 aaacaaaacacccttctaaagtatctatatccaattaaatgactttttttttcatttctg 607

                                                                       
Query: 181 tttgatactgatgttgcaaattgaatcctttctttgcaagaaagagttccaatcaattag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 tttgatactgatgttgcaaattgaatcctttctttgcaagaaagagttccaatcaattag 547

                                                                       
Query: 241 gacaaagcatgcctatgtggtcagatttaatttacacagatgccggattcttcgggtatt 300
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 546 gacaaagcatgcctatgtggtcagatttaatttacacagattccggattcttcgggtatt 487

                                                                       
Query: 301 tcaggtgagttgtatcatgctatacatagtctgtttgcttcaccaatataaactctggca 360
           |||||||||| | ||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct: 486 tcaggtgagtggaatcatgctatacatagtctgtttgctttatcaatataaactctggca 427

                                                                       
Query: 361 ctagatttaagcttgttttgttaaacctcaggtttttaaggtggtaatgtattcagcctg 420
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 426 ctagatttaagcttgttttgttaaacctcaggttttttaggtggtaatgtattcagcctg 367

                                                                       
Query: 421 caaatttccacagcaagaaatataaatgagttgttatgtcatcagaagaattctaataat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 caaatttccacagcaagaaatataaatgagttgttatgtcatcagaagaattctaataat 307

                                                                       
Query: 481 gttaggagactttgtatttattacaccaatatgtatgaaagtttccaactggaaaaagta 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 gttaggagactttgtatttattacaccaatatgtatgaaagtttccaactggaaaaagta 247

                                                         
Query: 541 aagaattctggtttgttttctgtttgttttttgccttttactttgt 586
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 aagaattctggtttgttttctgtttgttttttgccttttactttgt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 586
Length of database: 986
Length adjustment: 10
Effective length of query: 576
Effective length of database: 976
Effective search space:   562176
Effective search space used:   562176
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)