BAC Information

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BAC

Clone NameMSMg01-060O22
Chromosome5 (Build37)
Map Location 125,392,752 - 125,392,984
singlet/doubletsinglet
Overlap genenone
Upstream geneCcdc62, Hip1r, Vps37b, Abcb9, Ogfod2, Arl6ip4, Pitpnm2, Mphosph9, 2810006K23Rik, Cdk2ap1, Sbno1, Setd8, BC003324, LOC606492, 6330548G22Rik, 2900002H16Rik, Rpl32-ps5c, Tmed2, Ddx55, Eif2b1, Gtf2h3, 4432405B04Rik, Atp6v0a2, Atp6v0a2, Dnahc10, Ccdc92, Zfp664
Downstream gene3110032G18Rik, Ncor2, Scarb1, Ubc, Dhx37, Bri3bp, Aacs, Tmem132b, EG231736
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-060O22.T7 (MSMg01no060_o22.b1)MSMg01-060O22.TJ (MSMg01no060_o22.g1)
ACCAG287261AG287262
length732752
length of high quality
(start - end)
235 (127 - 361)75 (228 - 302)
definitionCHROMAT_FILE: MSMg01no060_o22.b1 PHD_FILE: MSMg01no060_o22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:03:46 2005CHROMAT_FILE: MSMg01no060_o22.g1 PHD_FILE: MSMg01no060_o22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:03:46 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCACAGTGTTGACTAAACTGGCCTTGATCCTCCCCCGTCCCCATGC
TGGATTACAGATGGTTAGTCCACCTGGCTCCCCTGACTTAGAGGTTCAAG
TTTTTCTTCAGAATATGTGATGCCGACTCTGAGGTTCCCAGCAAGCAATG
CTGGAATGTTCCTGATACCTGCCAAGCCCTGGGATGGTCAGGATCCCCTC
CCAAAGCCCTTGCCAAGCCGGCTGGAATGTCTGAATTGGCTTAAGAAAAG
AATTCAAAAGCTGAACTTGTTTTTTCTGAGGCCAAAGGGAAGCAGGGGAA
TGGGGGCGGTTTTTTTTTCCCCCACCCGCCTCCCGGGTTCCTGTTTGTTC
TAGATATGACTTTTCCCCCCCCCAAAAAAATAAAAAACGTCCTCCCTTTT
CTTCCTCATCTTTGCCATTTCTCCCCGCTTCCCTCTTCTCTCTCCTCCTT
CTCTTCCCCCTCTTCTTTTCACCACTCCTTTTTCTATCCCCCCTTCTTTT
TCACTTCTCCATCATTCCTTTTTTTTTCACCTTTTTCCTTTTTCTCCTCT
CTTTCCCCTCTCTTCTTCCTCCCACCTCCTTTCCTCTCATCTCCCCTCCT
CCCCCCTCTCTCTTTCCCTTTCTATTCTTTTCCCTTTTCTCCCTTCTCTC
TTTCCTCCCCCCTTCCTCCCTTTCCCTTCTCT
NAACGATGAAGCGGGTAAACTCGAGAACGGXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXAGTGCGAGGCATGGNTTCTCATG
AGGTCACCAGATACTGGAACAGATCTGTTCCCCAAGCCAGTGTGACCTCA
TCTTTGATAAGGACATCTTTTCCAATAAGGTCTCAACTTTGAGGCTCCAG
CGGCTTTAACCCCAGGGCCACTGACTGTCCCCTTGTGACCCCTGTCACCT
CTGAGCTCTAGCTATGGGATGCCCATGACTTAGAGGTAGCCAGCCAGGGT
GGCAGGCAGTGACAAAGTGAAGTCGGGTGTGTGAGCCATGACACCAGAAG
AGGGAATGACGAAAATAAGTCGCAAAAAGAACCCCGTACTCCCTAGATGG
GGCATCTCTAGGGCTAGACCTGACTGAGCATAAAAAGGAGGAGTGGATAG
AGAAGTGGGGGTGAACAAAAAAACGGGGACGGGCGCGCGGCAACACACCA
ATAACGCCCCGCAAAACCCACCAAATCAAAGAGATAAATGTGGGGGGGGG
GGCAAGGAAAGGCGGGGAAGACACGGTAACGCGAAGCCCGGCCCGCTGGC
ACCAAAAAAAAAAGAGGGGGGGAAAAAAACGAGGGGGCGGGGAAACAAAA
ATAACGGCGGAAACAAAAACCCACGGAGGGGGGGGGAAAAATAGATGGCG
CGCGAAAAAAAAAAAGGAACGGGCAAACGCGGGGGTGGTGACGACAGAAA
AA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no060_o22.b1 MSMg01no060_o22.b1 CHROMAT_FILE:
MSMg01no060_o22.b1 PHD_FILE: MSMg01no060_o22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:03:46 2005
         (235 letters)



>mm_chr5_125392552_125393186
          Length = 635

 Score =  408 bits (211), Expect = e-118
 Identities = 227/239 (94%), Gaps = 12/239 (5%)
 Strand = Plus / Minus

                                                                       
Query: 1   gctcccctgacttagaggttcaagtttttcttcagaatatgtgatgccgactctgaggtt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 gctcccctgacttagaggttcaagtttttcttcagaatatgtgatgccgactctgaggtt 374

                                                                       
Query: 61  cccagcaagcaatgctggaatgttcctgatacctgccaagccctgggatggtcaggatcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 cccagcaagcaatgctggaatgttcctgatacctgccaagccctgggatggtcaggatcc 314

                                                                       
Query: 121 cctcccaaagcccttgccaagccggctggaatgtctgaattggcttaagaaaagaattca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 cctcccaaagcccttgccaagccggctggaatgtctgaattggcttaagaaaagaattca 254

                                                                      
Query: 181 aaagctgaacttg------ttttttctgaggccaaagggaagcaggggaatgggggcgg 233
           |||||||||||||            ||||||||||||||||||||||||||||||||||
Sbjct: 253 aaagctgaacttgcaaagc------ctgaggccaaagggaagcaggggaatgggggcgg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 235
Length of database: 635
Length adjustment: 9
Effective length of query: 226
Effective length of database: 626
Effective search space:   141476
Effective search space used:   141476
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)