BAC Information

Click to search

BAC

Clone NameMSMg01-061H21
Chromosome5 (Build37)
Map Location 23,293,307 - 23,293,776
singlet/doubletsinglet
Overlap geneRint1
Upstream geneLhfpl3, EG625219, LOC100042101, LOC100042082, 4930580E04Rik, BC050254, Srpk2, Pus7
Downstream gene4933427G23Rik, Tomm7, LOC671410, Drctnnb1a, LOC627317, Klhl7, LOC100042211, Nupl2, LOC434047, LOC100042244, Kcnh2, Nos3, Atg9b, Abcb8, Accn3, Cdk5, Slc4a2, Fastk, Tmub1, Centg3, Gbx1, Asb10, 4931409K22Rik, Abcf2, LOC100042348, Smarcd3, 1700022A21Rik, Nub1, 2810046M22Rik, Crygn
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-061H21.T7 (MSMg01no061_h21.b1)MSMg01-061H21.TJ (MSMg01no061_h21.g1)
ACCAG287689AG287690
length726732
length of high quality
(start - end)
383 (74 - 456)471 (74 - 544)
definitionCHROMAT_FILE: MSMg01no061_h21.b1 PHD_FILE: MSMg01no061_h21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:04:29 2005CHROMAT_FILE: MSMg01no061_h21.g1 PHD_FILE: MSMg01no061_h21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:04:29 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAAAGAGGATCCGCGG
AATTCTATATAATCGTTATCCCAAATTGTGAAATCATTGATTTGTTTACA
CAGCATTACTACATGAGAATACATCTTCATGTTGATCTGCAGAAAATCTC
ATTAGGCTATGTAATAGTGACAGGAAAAGGCATATTAGCAGTGAGAAGAA
ATCCAGGGATGACGTCTCTAAGAACTCACCCACCACAGGCCATGCAGAAT
GGTAGGCCATCTCCAGTAAGCCCATTTGCACACCTTAGCCTTTCCTAGAT
GGCTTCTGACACTTCCCAATGCCATGACCCTTTAATTTCAGTTTCTTATG
TTGTGGTGATCCCCCACTATAAAGTTGTTTCATTGCTATTATATATCTGT
AATTTTGTTACTGTCACCCAATCATAAATAGCTAATATGCAGAATATCTG
ATACACAGCCCCCAAAGGGGTCAAGACCTATAGGTTGAGAACCAGTAGTC
TAAGTATTTAGTAGTTTTCACTAACTGTACTAGTTTTCTGAGAAGGAGGT
CCACAGAATTCCTCATGCTGTCACCCTAGAAGAAGCCCCATCATCTGATT
AGAAAACAAACAAACTGCCATCAACTCTGGGCTTGAGAGCTGCCAATGCC
CTTCTCCTGTGAGACCAATGGATGCACCTTTTTGACCCTATCACTATCAT
CCGTCTTCCCCTGCTATCTGAACCCN
CGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCAAGTGTGAGACACCATGCCAGGGCCG
AATTTTATTTTTAGTAACTCCAAAGAAGTGGAGAGAGCTCCTGCACAGAA
CTCAGCAGCCTGGGAAGCAGTAGGGCTGCCAGGTTCCCTGAGCGGCCAAC
ATGACATCCAACCAGCAGGGGGCGCCACAGAACAGGACAGCGGCGCGCAG
ATATGCCTCTCTAGGCCAAGAGAACGGAACCAGAGAGTCGGTGATAGGAA
GTCGAGGTGGCGCTCAATCCTGCGTCCCAGAAGGCTGGTCTGGTCGCCCA
GTCTGTGTGTTCCCTAGCCGGACTCTGCAGGCCGGGCTGGCGGTGCATGG
AATCCAGAATTCGTGCGCAGGCAGGATGCTTGCGGCTGACGATATCGGCG
AAGTGCCGGCAGCCCCGGTGAGGCGTCCCTGGAAACCCGGGGAAGGGACG
CTGGTGACCCTGCGAGGTGGCACAGACCCCACCTCCGCCCCGGTGACAGG
TTACCTTGGAAGTGGATTGGCGGCGGTTCCCACGGTCGGAAGTATGCTTG
GGATTCTCTGTTGAGGTAGCCACAAAGTTATTGTTCGATGTCTATGATGA
GACCGTTTTTGATAATTGTAAGAAAAGAGGCCTCGTATATCGTGCTATAT
TTAACTCGTAATCCTGACGAATTGATACCTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no061_h21.g1 MSMg01no061_h21.g1 CHROMAT_FILE:
MSMg01no061_h21.g1 PHD_FILE: MSMg01no061_h21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:04:29 2005
         (471 letters)



>mm_chr5_23293107_23293977
          Length = 871

 Score =  893 bits (462), Expect = 0.0
 Identities = 468/470 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   caagtgtgagacaccatgccagggccgaattttatttttagtaactccaaagaagtggag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caagtgtgagacaccatgccagggccgaattttatttttagtaactccaaagaagtggag 260

                                                                       
Query: 61  agagctcctgcacagaactcagcagcctgggaagcagtagggctgccaggttccctgagc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agagctcctgcacagaactcagcagcctgggaagcagtagggctgccaggttccctgagc 320

                                                                       
Query: 121 ggccaacatgacatccaaccagcagggggcgccacagaacaggacagcggcgcgcagata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggccaacatgacatccaaccagcagggggcgccacagaacaggacagcggcgcgcagata 380

                                                                       
Query: 181 tgcctctctaggccaagagaacggaaccagagagtcggtgataggaagtcgaggtggcgc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgcctctctaggccaagagaacggaaccagagagtcggtgataggaagtcgaggtggcgc 440

                                                                       
Query: 241 tcaatcctgcgtcccagaaggctggtctggtcgcccagtctgtgtgttccctagccggac 300
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcaaccctgcgtcccagaaggctggtctggtcgcccagtctgtgtgttccctagccggac 500

                                                                       
Query: 301 tctgcaggccgggctggcggtgcatggaatccagaattcgtgcgcaggcaggatgcttgc 360
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 501 tctgcaggccgggctggcggtgcatggaatccagaattcgtgcggaggcaggatgcttgc 560

                                                                       
Query: 361 ggctgacgatatcggcgaagtgccggcagccccggtgaggcgtccctggaaacccgggga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ggctgacgatatcggcgaagtgccggcagccccggtgaggcgtccctggaaacccgggga 620

                                                             
Query: 421 agggacgctggtgaccctgcgaggtggcacagaccccacctccgccccgg 470
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agggacgctggtgaccctgcgaggtggcacagaccccacctccgccccgg 670


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 471
Length of database: 871
Length adjustment: 10
Effective length of query: 461
Effective length of database: 861
Effective search space:   396921
Effective search space used:   396921
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)