BAC Information

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BAC

Clone NameMSMg01-061M01
Chromosome5 (Build37)
Map Location 87,887,172 - 87,887,841
singlet/doubletsinglet
Overlap genenone
Upstream geneTmprss11a, 9930032O22Rik, Tmprss11f, Tmprss11b, Tmprss11e, A730098D12Rik, LOC622056, Ugt2b34, Ugt2b1, LOC665424, LOC545767, Ugt2b35, Ugt2b36, LOC665440, Ugt2b5, LOC435848, Ugt2b37, LOC665468, Ugt2a3, LOC665476, LOC665483, LOC665494, LOC100039818, Ugt2b38
Downstream geneUgt2a2, Ugt2a1, Sult1b1, Sult1d1, Sult1e1, Csn1s1, Csn2, Csn1s2a, Csn1s2b, 4930432K09Rik, EG654494, Odam, BC037156, Csn3, BC051076, 2310003L06Rik, 4931407G18Rik, Smr1, EG665603, Smr2, LOC100039941, LOC630942, EG665615, Muc10, Amtn, LOC100039963, EG665631, Ambn
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-061M01.T7 (MSMg01no061_m01.b1)MSMg01-061M01.TJ (MSMg01no061_m01.g1)
ACCAG287889AG287890
length714714
length of high quality
(start - end)
654 (45 - 698)638 (75 - 712)
definitionCHROMAT_FILE: MSMg01no061_m01.b1 PHD_FILE: MSMg01no061_m01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:04:49 2005CHROMAT_FILE: MSMg01no061_m01.g1 PHD_FILE: MSMg01no061_m01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:04:49 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAGAGGGCCAGGACAATGAATAGAAATATGTAGTAGTGTCAGGTGGA
GAACAAGAGGAACCACTAGAAAGTCCCAGACACCAGGGATGTGAGAAGAT
CCCAGGACCCAATGGGCATGACATTAGCCAAAATATTCAACAGAGTGGTG
ATAGAACTTGATGAGACCACATCTAGTAGATAGGTGTCACCCCCAGTTGA
GGGATGGATCCACCCACCCATCTCAAAATTTTTAATCCCTAATTGTTTCT
GTCTAAAGGAAATCTAAGGGAAAAAAAAGATGGAGCAGAGACTGAAGTTA
AGGCTATCCCACCTTAACTTCAGAGACTGCCACACCTTGGGATCTATCCC
ATCTGCAGACAGTAAATCCTGAAACTATTGCTGATGCCAAGAAGTTTTTG
CAGATAGAAGCCTGTTATAGCTCTCCTCTGAGAGGTTCTATCAACACCTG
ACCAATACAGGTGCAGATACTCAGATTCAACCATTGGACTGAGCCCAGGG
AACCCAATAGAAGAGCCAGGGGAAGGACTGAAGAAGCTGAAGGGGATTTT
AACACCATAGGGAGAATAATATCAGGTAATCAGGACCCCCTAGATCTCCC
AGGGAATAAACAACCAACCAAAGAGTACACAAGGAAGGACCCATGGCTCC
AGGTTCATATGTAG
CGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCACTCTAGGCAGAGCTTAAAGCTAGA
AACCTTGAGCCTACCCCCATAGTGTTTCACCCTATCCAACAAGGCTACAT
TTACTCCAAAAAGGCCATAACTCATAATAGTTCCATCCTCTGTGGGTCAA
TCATTCAAACACATGAGTCTATGGGGGCCAAACCTATTCAAACCACCACA
GCTATAGAAGTCATTTCCCAGCTGTTAGTTCTTTAATCCACAGATAAAAT
AAGTTACACTGATGAATGTGGCTTGTATCATCAGGGATTTTCTGCAGTCT
CACTTGACTTTTGATAACACTCAGGCAAGGGAGATGCAGAAGAAAACAGC
AGAAGAGGGAGAAAACTTGAGTGAAAAGGATATTGAGTGGCCAAAGTAGT
TTTTCAACCCCAGTTTCCTACACAGTGGCATGGCTAGTTCACTACTTCTC
AATGCATGATTACCATACTTTGATCTCAGCTGGAAAAGAAATAAAGTGAA
AAGAATAGGAAGCAATCATGAAGTCAACACAAAAAGAGCTTTTTAAAACG
TANATAAAGATAAACCAAAATACATAAATATAAACCATTTGGAGATAAAG
TTGGTAACATTTACCAAATGCTTTTAATGTTCACAATATTATAGTAATTT
ATGTGCATCTTTAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no061_m01.g1 MSMg01no061_m01.g1 CHROMAT_FILE:
MSMg01no061_m01.g1 PHD_FILE: MSMg01no061_m01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:04:49 2005
         (638 letters)



>mm_chr5_87886972_87888009
          Length = 1038

 Score =  719 bits (372), Expect = 0.0
 Identities = 587/677 (86%), Gaps = 46/677 (6%)
 Strand = Plus / Plus

                                                                       
Query: 1   cactctaggcagagcttaaagctagaaaccttgagcctacccccatagtgtttcacccta 60
           |||||||||||||||||||||||||||||||  |||| ||||| | |||| ||||||| |
Sbjct: 201 cactctaggcagagcttaaagctagaaacctcaagcccacccctacagtggttcacccca 260

                                                                       
Query: 61  tccaacaaggct-acatttactccaaaaaggccataactcataatagttccatcctctgt 119
           |||||||||| | ||||||||| |||||||||||||||||  |||||| |||| ||||||
Sbjct: 261 tccaacaagg-tcacatttacttcaaaaaggccataactcccaatagtgccattctctgt 319

                                                                       
Query: 120 gggtcaatcattcaaacacatgagtctatgggggccaaacctattcaaaccaccacagct 179
           |||||||||||||||||||||||||||||||| | |||||||| ||||||  |||||| |
Sbjct: 320 gggtcaatcattcaaacacatgagtctatgggagacaaacctactcaaactgccacagtt 379

                                                                       
Query: 180 atagaagtcatttcccagctgttagttctttaatccacagataaaataagttacactgat 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 atagaagtcatttcccagctgttagttctttaatccacagataaaataagttacactgat 439

                                                                       
Query: 240 gaatgtggcttgtatcatcagggattttctgcagtctcacttgacttttgataacactca 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 gaatgtggcttgtatcatcagggattttctgcagtctcacttgacttttgataacactca 499

                                                                       
Query: 300 ggcaagggagatgcagaagaaaacagcagaagagggagaaaacttgagtgaaaaggatat 359
           ||||||||| | ||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 500 ggcaagggaaaagcagaagaaaacagcagaagagggagaaaacttgagtgagaaggatat 559

                                                                       
Query: 360 tgagtggc-----ca--a-ag--ta------gtt-tt--------------tcaacccca 388
           ||||||||     ||  | ||  ||      ||| ||              |||| ||||
Sbjct: 560 tgagtggctgaagcatcagagaataaaaggggttcttaggctcagtggtgttcaaaccca 619

                                                                       
Query: 389 gtttcct-acacagtggcatggctagttcactacttctcaatgcatgattaccatacttt 447
           ||||| | ||||||||||||||||||| |||||| |||||||| |||| |||||||||||
Sbjct: 620 gtttc-tcacacagtggcatggctagtccactacatctcaatgtatgactaccatacttt 678

                                                                       
Query: 448 gatctcagctggaaaagaaa--taaagtgaaaagaatagg-aagcaatcatgaagtcaac 504
           || || | |||||||| |||  ||||||||||||||| || |||||||||||||||||||
Sbjct: 679 gaccttaactggaaaaaaaaattaaagtgaaaagaat-ggcaagcaatcatgaagtcaac 737

                                                                       
Query: 505 acaaaaagag--ctttttaaaacgtanataaagataaaccaaaatacataaatataaacc 562
           ||||||| ||  ||||| |||||||| ||||||||||| |||||||||| ||||| |  |
Sbjct: 738 acaaaaa-agtccttttcaaaacgtaaataaagataaatcaaaatacatcaatatgagtc 796

                                                                       
Query: 563 atttggagataaagttggtaacatttaccaaatgcttt-taatgttcacaatattatagt 621
           |||  | |||||||||| |||| ||||||||||  ||| ||||| | |||||||||||| 
Sbjct: 797 att--gtgataaagttgttaacgtttaccaaata-tttctaatggtaacaatattataga 853

                            
Query: 622 aatttatgtgcatcttt 638
           |||||||||||||||||
Sbjct: 854 aatttatgtgcatcttt 870


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 638
Length of database: 1038
Length adjustment: 10
Effective length of query: 628
Effective length of database: 1028
Effective search space:   645584
Effective search space used:   645584
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)