XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTT
GTTTACATCTATAACCCATTTTTTAATGTGGTTATTTGAATTTCTGGAGT
CCAACTTCTTGAGCTCTTTGTATATATTGACTATTAGTCCCCTATCAGAT
TTAGGATTGGTAAAGATCCTTTCCCAGTCTATTGGTGGCCTTTTTGTCTT
ATTGACAGTTTCTTTTGCCTTACAGAAGCTTTGCAATTTTATGAGGTCCC
ATTTGTCAATTCTTGATGTTCCAGCACAAGCCATTGCTGTTCTGTTTAGG
AATTTTTCCCCTGTGCCCATATCTTCGAGGATTTTTCACACTTTCTCCTC
TATTAATTTCAGTGTCTCTGAACTTGAGCTTTGTACAAGGAGATAGAAAT
GGATCAATTTTCATTCTTCTATATTATAACCACCAGTTGTGCCAGTGCCA
TTTGTTGAAAATGCTGTCTTTTTTCCACTGGATGGTTTTAGCAACTTTGT
CAAATATCAAGTGACCATAGGTGTGTGGATTAATTTCTGGGTGTTCAATT
CTATTCCATTAATCTACCTGTCTATCACTGTATAAGTACCATGAAGTTTT
TATCACAATTGCTCTGTAATACAGCTTAATGTCAGGCATGGTGATTCCAC
CAGAGGTTATTTTATTGTTGAGAATAGGTTTTGCTATCCTAGGTTTTTTT
ATTATTCTAGATAAATTTGCA

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXAATAATAGTTTGCCTGATCTTGCTCAGATGTTC
TGTCTTATGTTTCATGACATTAAACAACCCTTAGCTTCTGCACTGTAAAA
CCATGGTCCTTTGGTTACCAAAATAATTTTTTTCAATTTCTCCATGTCTC
TACTGTTGAATTATTTCATATCATAATGCTGAGCATCTTAATGATATAAC
TGGAGAGAACCTTCTTTATATTAACACTGGATTCTGAAATACATTCATCA
CTAACAAGGTTAGAGAGATTATTAAAGTAAATGTTTTTAGAAATTGTTTT
AAATAAAGTATCTCTGTGTTATTTTTCATATAAACTTGCCTATTTTTGGT
TTCCTAGTGAGGAGGTGGAATGTAAATTTAATGTAGTAAAGTGTGTTACT
GTCAGGAATAAATATATGTTTGTACAAGTATCCTGCTTTCATCCAACCAT
TAGACGTAAATTACACGTGTCCTTACTTAAACTCATTAGCATAAAACTCC
CTTCCCCTCCCTCCCCCTCTGAAACCACCACTACAGAAAACACTCCAGTG
GTAACTCTTCATTTTGACGATGATCTACCAGTAGTGTCTTGCGTTGTCAC
TCACATTGAGAGAATTCTTCCTCTGTTGGCCAGAAGCTACATTTCAGCTT
TGACAAAAGGCCTGCTCAN

Query= MSMg01no061_m04.g1 MSMg01no061_m04.g1 CHROMAT_FILE:
MSMg01no061_m04.g1 PHD_FILE: MSMg01no061_m04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:04:50 2005
         (612 letters)



>mm_chr5_12665075_12666085
          Length = 1011

 Score = 1091 bits (564), Expect = 0.0
 Identities = 600/614 (97%), Gaps = 5/614 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   aataatagtttgcctgatcttgctcagatgttctgtcttatgtttcatgacattaaacaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 811 aataatagtttgcctgatcttgctcagatgttctgtcttatgtttcacgacattaaacaa 752

                                                                       
Query: 61  cccttagcttctgcactgtaaaaccatggtcctttggttaccaaaataatttttttcaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 751 cccttagcttctgcactgtaaaaccatggtcctttggttaccaaaataatttttttcaat 692

                                                                       
Query: 121 ttctccatgtctctactgttgaattatttcatatcataatgctgagcatcttaatgatat 180
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 691 ttctccatgtctctactgttgaattattttatatcataatgctgagcatcttaatgatat 632

                                                                       
Query: 181 aactggagagaaccttctttatattaacactggattctgaaatacattcatcactaacaa 240
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 631 aactagagagaaccttctttatattaacactggattctgaaatacattcatcactaacaa 572

                                                                       
Query: 241 ggttagagagattattaaagtaaatgtttttagaaattgttttaaataaagtatctctgt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 ggttagagagattattaaagtaaatgtttttagaaattgttttaaataaagtatctctgt 512

                                                                       
Query: 301 gttatttttcatataaacttgcctatttttggtttcctagtgaggaggtggaatgtaaat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 gttatttttcatataaacttgcctatttttggtttcctagtgaggaggtggaatgtaaat 452

                                                                       
Query: 361 ttaatgtagtaaagtgtgttactgtcaggaataaatatatgtttgtacaagtatcctgct 420
           ||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||
Sbjct: 451 ttaatgtagtaaagtgtgttactgtcaggaacaaatatatgcttgtacaagtatcctgct 392

                                                                       
Query: 421 ttcatccaaccattagacgtaaattacac--gtgtccttacttaaactcattagcataaa 478
           |||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||
Sbjct: 391 ttcatccaaccattagacgtaaattacacatgtgtccttacttaaactcattagcataaa 332

                                                                       
Query: 479 actcccttcccctccctccccctctgaaaccaccactacagaaaacactccagtggtaac 538
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 actcccttcccccccctccccctctgaaaccaccactacagaaaacactccagtggtaac 272

                                                                       
Query: 539 tcttcattttgacgatgatctaccagtagtgtcttgcgttgtcactcacattgagagaat 598
           ||||||||||||||||   ||||||||||||||||| ||||||||||||||||||||| |
Sbjct: 271 tcttcattttgacgat---ctaccagtagtgtcttgggttgtcactcacattgagagagt 215

                         
Query: 599 tcttcctctgttgg 612
           |||| |||||||||
Sbjct: 214 tcttactctgttgg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 612
Length of database: 1011
Length adjustment: 10
Effective length of query: 602
Effective length of database: 1001
Effective search space:   602602
Effective search space used:   602602
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)