Query= MSMg01no061_m22.b1 MSMg01no061_m22.b1 CHROMAT_FILE:
MSMg01no061_m22.b1 PHD_FILE: MSMg01no061_m22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:04:53 2005
(615 letters)
>mm_chr5_102403339_102404349
Length = 1011
Score = 967 bits (500), Expect = 0.0
Identities = 581/610 (95%), Gaps = 4/610 (0%)
Strand = Plus / Plus
Query: 6 gaattccaaacctcggctggtcaaataacatcatacagaggtttgggaactgcctatgcc 65
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 gaattccaaacctcggatggtcaaataacatcatacagaggtttgggaactgcctatgcc 265
Query: 66 agtacttctaatcaggcagaagtcagataccacgtcagcgttcatgttgaacacagagag 125
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 266 agtacttctaatcaggcagaagtcagataccacgtcagcgttcatgatgaacacagagag 325
Query: 126 ctcagacgcaagctggcaggaagctcaggtgtacactactggtgaggcaggcacacagga 185
||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct: 326 atcagacgcaagctggcaggaagctcaggtgtacactactggtg----aggcatacagga 381
Query: 186 ggctctaagttctaaccgaaggaaccacaataggaaagctgaaagcaattcctgtaactg 245
|||||||||||| |||| ||||| ||||||||| ||||||||||||||||||||||||||
Sbjct: 382 ggctctaagttccaacccaaggagccacaatagaaaagctgaaagcaattcctgtaactg 441
Query: 246 cgctaaacaattacagtgcctttgaaatgctcatcgtctgagagaagggaattatcttat 305
|||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 442 cgctaaacaattaccgtgcctttgagatgctcatcgtctgagagaagggaattatcttac 501
Query: 306 accaatcaatagccagtagagtatcatatgtttttaaaaaagagaactatgaagtagaaa 365
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 502 accaatcaatagccagtagagtatcatatgttttttaaaaagagaactatgaagtagaaa 561
Query: 366 aacaaaaacatcctacaacgttcttgtaaattttactcgttccagtaagactgaggactt 425
|||||||||||| ||||| |||||||||||||||||| |||||| |||||||||||||||
Sbjct: 562 aacaaaaacatcttacaatgttcttgtaaattttactggttccaataagactgaggactt 621
Query: 426 tgatgaacggggcttgaattagcggcctgctcacagccatttctgctcccatggtttggt 485
| |||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||
Sbjct: 622 tcatgaacggggcttgaaccagcggcctgctcacagccatttctgctcccatggttttgt 681
Query: 486 ttcgtttttttaattaaccttattcgtttttgtttcaaatgatattcccccccttctctg 545
|| |||||||||||||||||||||||||||||||||||| |||| ||||||||||||||
Sbjct: 682 tttgtttttttaattaaccttattcgtttttgtttcaaacgatacccccccccttctctg 741
Query: 546 atacccctccacaactcccccatcccacccttcctcccctttgactgtatgagggagctc 605
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 742 atacccctccacaactcccccatcccacccttcttcccctttgactgtatgagggagctc 801
Query: 606 ccccacccac 615
||||||||||
Sbjct: 802 ccccacccac 811
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 615
Length of database: 1011
Length adjustment: 10
Effective length of query: 605
Effective length of database: 1001
Effective search space: 605605
Effective search space used: 605605
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no061_m22.g1 MSMg01no061_m22.g1 CHROMAT_FILE:
MSMg01no061_m22.g1 PHD_FILE: MSMg01no061_m22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:04:53 2005
(564 letters)
>mm_chr5_102569022_102569985
Length = 964
Score = 1044 bits (540), Expect = 0.0
Identities = 552/556 (99%)
Strand = Plus / Minus
Query: 9 ctctctattacatcactagactttgagctcccagaaaggagaaacctcttcaatttttgg 68
||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 764 ctctctagtacatcactagactttgagctcccagaaaggagaaacctcttcaatttatgg 705
Query: 69 tagatttcttgtaatgagcacagttcttgacacaagttagatttctttgtgtagatttgc 128
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 704 tagatttcttgtaatgagcacagttcttgacacaagttagatttctttgtgtagatttgc 645
Query: 129 taatgaagggtagcaaggagaaagctttataaccaccaacttgtttgagtacaaatacgt 188
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 644 taatgaagggtagcaaggagaaagctttataaccaccaacttgtttgagtacaaatacgt 585
Query: 189 ttccaaaatattgggagatcaattacgaaccctattttccaacagtgcagtcacgtttct 248
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 584 ttccaaaatattgggagatcaattacgaaccctattttccaacagtgcagtcacgtttct 525
Query: 249 ctttcaagcattctgtctataatctttgaggttcttttcagcccatttactctctcattg 308
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 ctttcaagcattctgtctataatctttgaggttcttttcagcccatttactctctcattg 465
Query: 309 attaaatggcagagtagggagctgtgcacagcctaaccgatgacaaattgcttattaata 368
|||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct: 464 attaaatggcagagtagggagctgtgcacagcctaagcaatgacaaattgcttattaata 405
Query: 369 tcatccaaattaatgaggtgtgtgtgttttctcagggtaaaatgaatattaagaattgaa 428
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 tcatccaaattaatgaggtgtgtgtgttttctcagggtaaaatgaatattaagaattgaa 345
Query: 429 atgtccaaagatgtgtaaaaactgtttgcatttggccatcagaaaagcagacacctcgaa 488
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 atgtccaaagatgtgtaaaaactgtttgcatttggccatcagaaaagcagacacctcgaa 285
Query: 489 actatttagcatttttctttctgttaccatggaaatgcatgtgaatccccttagacaaaa 548
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 actatttagcatttttctttctgttaccatggaaatgcatgtgaatccccttagacaaaa 225
Query: 549 atcccactgcagtgac 564
||||||||||||||||
Sbjct: 224 atcccactgcagtgac 209
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 564
Length of database: 964
Length adjustment: 10
Effective length of query: 554
Effective length of database: 954
Effective search space: 528516
Effective search space used: 528516
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
