Query= MSMg01no061_n02.b1 MSMg01no061_n02.b1 CHROMAT_FILE:
MSMg01no061_n02.b1 PHD_FILE: MSMg01no061_n02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:04:54 2005
(370 letters)
>mm_chr5_73993443_73994212
Length = 770
Score = 710 bits (367), Expect = 0.0
Identities = 367/367 (100%)
Strand = Plus / Plus
Query: 4 ggaattccctggtctgtactacagagaatgctttttcattatttactcaataaatgcata 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattccctggtctgtactacagagaatgctttttcattatttactcaataaatgcata 263
Query: 64 tattaagaagctattaaatgtgaagtctcggtgagacagacatgcggggttttgttgttg 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tattaagaagctattaaatgtgaagtctcggtgagacagacatgcggggttttgttgttg 323
Query: 124 ttattgttctcatgaagctcctggtataaaaagggcagacagacattgagctggtggtca 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ttattgttctcatgaagctcctggtataaaaagggcagacagacattgagctggtggtca 383
Query: 184 tggtataatcatttaattgtacacatgatgcgtgtcttctttgtgaaaattaacgatgtg 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tggtataatcatttaattgtacacatgatgcgtgtcttctttgtgaaaattaacgatgtg 443
Query: 244 taatgagagtcgtaataagggaatccaactaattctagggtctaacagttccccaaggag 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 taatgagagtcgtaataagggaatccaactaattctagggtctaacagttccccaaggag 503
Query: 304 ataacaagaaagctgagccctgtgtagatgctagtcagctaaaggaggctcctttggagg 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ataacaagaaagctgagccctgtgtagatgctagtcagctaaaggaggctcctttggagg 563
Query: 364 gttcaga 370
|||||||
Sbjct: 564 gttcaga 570
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 370
Length of database: 770
Length adjustment: 9
Effective length of query: 361
Effective length of database: 761
Effective search space: 274721
Effective search space used: 274721
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no061_n02.g1 MSMg01no061_n02.g1 CHROMAT_FILE:
MSMg01no061_n02.g1 PHD_FILE: MSMg01no061_n02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:04:54 2005
(605 letters)
>mm_chr5_74123448_74124453
Length = 1006
Score = 1110 bits (574), Expect = 0.0
Identities = 598/606 (98%), Gaps = 1/606 (0%)
Strand = Plus / Minus
Query: 1 cataaacgcagtagctcctcatctccaaacactgccaactttatatttcaacaccctgag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 806 cataaacgcagtagctcctcatctccaaacactgccaactttatatttcaacaccctgag 747
Query: 61 ctggccaaataatcctaccctcttggctctctggtaccagtttgttactcggccctaagc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 746 ctggccaaataatcctaccctcttggctctctggtaccagtttgttactcggccctaagc 687
Query: 121 atccccaaatctctgtggtgctcagctgttctccagtcagcttccatgcctgtcccaggg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 atccccaaatctctgtggtgctcagctgttctccagtcagcttccatgcctgtcccaggg 627
Query: 181 ttgtatcccttctgagatccactctggacacagtctcaataggagtaggaaatataacta 240
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 ttgtatcctttctgagatccactctggacacagtctcaataggagtaggaaatataacta 567
Query: 241 atctcgctgcagcacagctcggcatttaacatagtaaacatttcaggtcgcccatttgct 300
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 566 atctcgctgcagcacagctcagcatttaacatagtaaacatttcaggtcgcccatttgct 507
Query: 301 aaacctggggatacaaacacactga-tttttttttcctgagctggcagtactacatttga 359
||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||
Sbjct: 506 aaacctggggatacaaacacactgattttttttttcctgagctgggagtactacatttga 447
Query: 360 tctgcttacacatagactcctgatcaggtctgatcagcaaaaccagcctaaaaaccaatg 419
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 446 tctgcttacacatagactcctgatcaggtctgaccagcaaaaccagcctaaaaaccaatg 387
Query: 420 gggaaaactcagccacgagcctttcccagagccccactctgagctcccagaacacctgga 479
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 ggaaaaactcagccacgagcctttcccagagccccactctgagctcccagaacacctgga 327
Query: 480 atgattgtttgagcgtctcacatccagggattttagtttgccagtgcctcattcaaactt 539
|||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 atgattgtttaagagtctcacatccagggattttagtttgccagtgcctcattcaaactt 267
Query: 540 gtagattacagtctttctgcctccatttctcagtattttggaagggggaagaaacactaa 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 gtagattacagtctttctgcctccatttctcagtattttggaagggggaagaaacactaa 207
Query: 600 gctttc 605
||||||
Sbjct: 206 gctttc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 605
Length of database: 1006
Length adjustment: 10
Effective length of query: 595
Effective length of database: 996
Effective search space: 592620
Effective search space used: 592620
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
