BAC Information

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BAC

Clone NameMSMg01-062E13
Chromosome5 (Build37)
Map Location 108,284,052 - 108,467,069
singlet/doubletdoublet
Overlap geneEvi5, Rpl5, 2900024C23Rik
Upstream geneHfm1, Cdc7, Tgfbr3, LOC666518, Brdt, LOC666535, Abhd7, 4921521K07Rik, LOC72342, 1700028K03Rik, Glmn, AW060207, Gfi1, LOC100042473, 1700013N18Rik
Downstream geneLOC675566, Mtf2, Tmed5, Ccdc18, EG633606, LOC666614, Dr1, Pigg, Pde6b, Atp5k, Mfsd7, Pcgf3, LOC100042557, Cplx1, LOC100042571, Gak, Tmem175, Dgkq, Idua, Slc26a1, LOC100042616, Fgfrl1, LOC671564, 1810008K16Rik, EG627479, EG435864, EG667087, LOC100041615, V2r16, LOC545792
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-062E13.T7 (MSMg01no062_e13.b1)MSMg01-062E13.TJ (MSMg01no062_e13.g1)
ACCAG288294AG288295
length1,1951,226
length of high quality
(start - end)		735 (90 - 824)736 (84 - 819)
definitionCHROMAT_FILE: MSMg01no062_e13.b1 PHD_FILE: MSMg01no062_e13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:05:43 2005CHROMAT_FILE: MSMg01no062_e13.g1 PHD_FILE: MSMg01no062_e13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:05:43 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(108,466,380 - 108,467,069)(108,284,052 - 108,284,786)
sequence
CCCTTTCTTTTTTTNTACATTCGGCGCTATAGACTCCTATAGGGAGAGGA
TCCGCGGAATTCACTCCAAACAAGTAAACCTTTTAGAGTGAGTATGGGCT
CATTTGTCAAAGCATTAACCCTGGGCAGCTGAGATGGCCCACCAGGTAAG
TGTACCTACCACCTAGCCTGAGGAGCTGAGTATGAGTCTAGGACCCTCAG
GGTTGAAAGGAAGACTAACTTCTAACAAGTTGTCCATTAACCATTGCACA
TTCCTCTCAACACACACATGCGCACGCACACGCACACACGCATGCATAAG
ATAAAATAAATAAATCTAAGATAAGATAAAATAAATAAATCTAATAACTA
AAAGACCTTTAACAATATGTGTGTGCAGAATTCTTTTCACAGTATGGCCC
GCATATGTGCTCCCACAGTGGGAAGTATCACCTTCCATCTGAATTCTGAT
ACATTTTATTTAATCAAGGGCATGAGTTACATGAGTTACGTGAAAGGAAC
TGACCATGCTGTTAGTGATAAAGCTATAACCTCCCTCTGTGTTATAATCC
TAGTGCAATTTTAGTTAAAGGTGCAGACAAACAGGAAATTAAATTTAGAA
GGGCAAGCATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGAAGGGC
AAGCATGTAAACACCCCAAGGGAGAGTGACAGAAAGGCAAAGCCACCCCT
AAACCTCAGCTTGCCCATTTGCAAAGGGCAGGTGTGCACCTGTCCCTCGG
GACTGGTGGGATTAAATAGGATGGCATATGGAAATTGTCTAGAGCGTATG
AAACTAAGTTTCCAAGCATCAGAGCTCTTGTTGTTAAAGTTATTTCTGGC
AGTCAGGTTCTACCACAACACTGACCCCCTGATATTATTTCTGTTTCTTT
CCTGCTTGACTATAGACCTTCCAGTTTCTAGATATTCTGGAATCCCGAAT
TTCTTCCAACTCCCTCAGAATACTCTTTTTCTTAAGTTCTAAATTACTCC
GGAATTTCTGTGGAAGGGTAGTTTATTATTTTTATAATGAATATGGGATT
ATCCTTTGTTTAATTTTTATCCCAAAATTTATTCCCCAAATTTCTCAGAA
TTTTTTTTCTTTTCCCAAAATTTTCAATTTTATTGTTTTCGAAAAAATTT
TCTCCCTCATTATTTCTTTATAGTTTTTTGGGGAATATGTTTTCC

TTTCTCTTTNNTNCCATGGAGGCTGGGGCGCCXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCCCTTATAGATATGCCTTACTGAACTGAC
TCAATTTCTAGACAGGCATATGACCAATTTCCCCACCTTCTCTCCACATA
AATAACATTTATCTGAAAAGGCACAATCCTTTACAGTTTTATATTTGAGC
CTCCTGAAAGAGCTGAAGAAATTTTATATAGGATCTAGTGTGAAGTACCA
TTTTAAAATGAGGAATGGTAATATGGTTCAATGGATAAAGGCACTTGCCA
AGCCTGACCTGACGACCTAGTTCAATCTCTGGGACTCACGCTAGGAGAAA
ACAGACAGCTGTGTGTTGTCCTCTAAACTTTAAACACCCGCCATAATACA
CAAAAGCCTATGTGCACACACATTACATAATAGATAAAATGTAACTAGAA
ATGAAAGAACTAGCTTAAAGGGATGTAGGAGGAAACTGAAAATGTCAGAT
CAAATCATGAAGATGATAGTAAAAAGGAATTTGAGATCTATCTAGAGTTT
AACTGGAAACCACTAAAGTTTAAACATGGGGACACCATGATCTTAATTTA
CTTTATGAGAGTAATCAATATAAAAGGTATATTTGTAGGGAGGGAAGGTC
AGACAATAGAGAGACTAACCAGGTGACTATTAAATCTAAGTGAAGAGCAG
TATGATTTAGGCTTCTGAGGGCACAACAGAGATAAACACAGATGTAAGTA
AGACACTATTGCAAAATGACTTTCTGATGAAACCTATCTAGAACACAGGA
GGAGGACAATTCAAAGATAAAATCTGCCCTGACTTGAGCAACTGGCGATA
CCATTTCCTGAAACAAGAAAAACCACTTGTCTTAATTAGGGTTTTTCGTC
TCTTGACAGACAACTTAACCAAGGCTAACTCTTAATAACAATATTTAATT
TGAGCTAGCTTACAGATTCATTGGTTTAGTCCCATTTATCATTCATAGAA
CCTCCAAAGATTTGGTTTTTTTTTAACCTAATTTGCCCCATAACCATAAA
ACGGTTGTTATTTGTGAATTTTTGCTTTGGTTTGAATCCCCCGTTGGGGA
AAAATACTCTCAATAATCCCCAGGTGGAACCTTGCAATTTTTTAATCCCC
CCTCCCCTTTTTCTATAATAACTCGATAAATTGTAATGTCCTCCCCCCGC
TGGTGCCCTGAAAAATATATATACTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no062_e13.b1 MSMg01no062_e13.b1 CHROMAT_FILE:
MSMg01no062_e13.b1 PHD_FILE: MSMg01no062_e13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:05:43 2005
         (735 letters)



>mm_chr5_108466100_108467235
          Length = 1136

 Score = 1164 bits (602), Expect = 0.0
 Identities = 680/736 (92%), Gaps = 47/736 (6%)
 Strand = Plus / Minus

                                                                       
Query: 1   gagtatgggctcatttgtcaaagcattaaccctgggcagctgagatggcccaccaggtaa 60
           ||||| ||||||||||||||||||||||||  ||||||||||||||||| ||||||||||
Sbjct: 970 gagtacgggctcatttgtcaaagcattaacaatgggcagctgagatggctcaccaggtaa 911

                                                                       
Query: 61  gtgtacctaccacctagcctgaggagctgagtatgagtctaggaccctcagggttgaaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 910 gtgtacctaccacctagcctgaggagctgagtatgagtctaggaccctcagggttgaaag 851

                                                                       
Query: 121 gaagactaacttctaacaagttgtccattaaccattgcacattcctctcaacacacacat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 850 gaagactaacttctaacaagttgtccattaaccattgcacattcctctcaacacacacat 791

                                                                       
Query: 181 gcgcacgcacacgcacacacgcatgcataagataaaataaataaatctaagataagataa 240
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 790 gcgcacgcacatgcacacacgcatgcataagataaaataaataaatctaagataagataa 731

                                                                       
Query: 241 aataaataaatctaataactaaaagacctttaacaatatgtgtgtgcagaattcttttca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 730 aataaataaatctaataactaaaagacctttaacaatatgtgtgtgcagaattcttttca 671

                                                                       
Query: 301 cagtatggcccgcatatgtgctcccacagtgggaagtatcaccttccatctgaattctga 360
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 670 cagtatggcccgcatatgtgttcccacagtgggaagtatcaccttccatctgaattctga 611

                                                                       
Query: 361 tacattttatttaatcaagggcatgagttacatgagtt-acgtgaaaggaactgaccatg 419
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 610 tacattttatttaatcaagggcatgagttacatgagttaacgtgaaaggaactgaccatg 551

                                                                       
Query: 420 ctgttagtgataaagctataacctccctctgtgttataatcctagtgcaattttagttaa 479
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 550 ctgttagtgataaagctataacctccctctgtgttataatcctagtgcaattttagttga 491

                                                                       
Query: 480 aggtgcagacaaacaggaaattaaatttagaagggcaagcatcgcttctcggccttttgg 539
           |||||||||||||||||||||||||||                                 
Sbjct: 490 aggtgcagacaaacaggaaattaaatt--------------------------------- 464

                                                                       
Query: 540 ctaagatcaagtgtagaagggcaagcatgtaaacaccccaagggagagtgacagaaaggc 599
                        |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 -------------tagaagggcaagcatgtaaacaccccaagggagagtgacagaaaggc 417

                                                                       
Query: 600 aaagccacccctaaacctcagcttgcccatttgcaaagggcaggtgtgcacctgtccctc 659
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 aaagccacccctaaacctcagcttgcccatttgcaaagggcaggtgtgcacctgtccctc 357

                                                                       
Query: 660 gggactggtgggattaaataggatggcatatggaaattgtctagagcgtatgaaactaag 719
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 gggactggtgggattaaataggatggcatatggaaattgtctagagcgtatgaaactaag 297

                           
Query: 720 tttccaagcatcagag 735
           |||||||  |||||||
Sbjct: 296 tttccaaatatcagag 281


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 735
Length of database: 1136
Length adjustment: 10
Effective length of query: 725
Effective length of database: 1126
Effective search space:   816350
Effective search space used:   816350
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)

Query= MSMg01no062_e13.g1 MSMg01no062_e13.g1 CHROMAT_FILE:
MSMg01no062_e13.g1 PHD_FILE: MSMg01no062_e13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:05:43 2005
         (736 letters)



>mm_chr5_108283852_108284987
          Length = 1136

 Score = 1369 bits (708), Expect = 0.0
 Identities = 729/736 (99%), Gaps = 1/736 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgccttactgaactgactcaatttctagacaggcatatgaccaatttccccaccttctct 60
           ||||||||||||||||||||||||||||| |||||||||||||||||   ||||||||||
Sbjct: 201 tgccttactgaactgactcaatttctagagaggcatatgaccaattttttcaccttctct 260

                                                                       
Query: 61  ccacataaataacatttatctgaaaaggcacaatcctttacagttttatatttgagcctc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccacataaataacatttatctgaaaaggcacaatcctttacagttttatatttgagcctc 320

                                                                       
Query: 121 ctgaaagagctgaagaaattttatataggatctagtgtgaagtaccattttaaaatgagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 321 ctgaaagagctgaagaaattttatataggatctagtgtgaagtaccactttaaaatgagg 380

                                                                       
Query: 181 aatggtaatatggttcaatggataaaggcacttgccaagcctgacctgacgacctagttc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aatggtaatatggttcaatggataaaggcacttgccaagcctgacctgacgacctagttc 440

                                                                       
Query: 241 aatctctgggactcacgctaggagaaaacagacagctgtgtgttgtcctctaaactttaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aatctctgggactcacgctaggagaaaacagacagctgtgtgttgtcctctaaactttaa 500

                                                                       
Query: 301 acacccgccataatacacaaaagcctatgtgcacacacattacataatagataaaatgta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 acacccgccataatacacaaaagcctatgtgcacacacattacataatagataaaatgta 560

                                                                       
Query: 361 actagaaatgaaagaactagcttaaagggatgtaggaggaaactgaaaatgtcagatcaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 actagaaatgaaagaactagcttaaagggatgtaggaggaaactgaaaatgtcagatcaa 620

                                                                       
Query: 421 atcatgaagatgatagtaaaaaggaatttgagatctatctagagtttaactggaaaccac 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 atcatgaagatgatagtaaaaaggaatttgagatctatctagagtttaactggaaaccac 680

                                                                       
Query: 481 taaagtttaaacatggggacaccatgatcttaatttactttatgagagtaatcaatataa 540
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 681 taaagtttaaacatggggacaccatgatcttaatttgctttatgagagtaatcaatataa 740

                                                                       
Query: 541 aaggtatatttgtagggagggaaggtcagacaatagagagactaaccaggtgactattaa 600
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 741 aaggtatatttgtagggagggaaggtcagacaatagagagactaac-aggtgactattaa 799

                                                                       
Query: 601 atctaagtgaagagcagtatgatttaggcttctgagggcacaacagagataaacacagat 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 atctaagtgaagagcagtatgatttaggcttctgagggcacaacagagataaacacagat 859

                                                                       
Query: 661 gtaagtaagacactattgcaaaatgactttctgatgaaacctatctagaacacaggagga 720
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 860 gtaagtaagacactattgcaaaatgactttctgatgaaacctatctagaacacaggagga 919

                           
Query: 721 ggacaattcaaagata 736
           ||||||||||||||||
Sbjct: 920 ggacaattcaaagata 935


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 736
Length of database: 1136
Length adjustment: 10
Effective length of query: 726
Effective length of database: 1126
Effective search space:   817476
Effective search space used:   817476
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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