BAC Information

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BAC

Clone NameMSMg01-062G14
Chromosome5 (Build37)
Map Location 73,142,733 - 73,143,244
singlet/doubletsinglet
Overlap genenone
Upstream geneGabrb1, LOC666545, Commd8, Atp10d, Corin, Nfxl1, Zar1, EG545758, Cnga1, LOC384275, Npal1, Txk
Downstream geneTec, Slain2, Slc10a4, LOC667127, Fryl, Ociad1, Ociad2, LOC667154, LOC100042205, C130090K23Rik, LOC627733, Dcun1d4, BC031901, Sgcb, Spata18
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-062G14.T7 (MSMg01no062_g14.b1)MSMg01-062G14.TJ (MSMg01no062_g14.g1)
ACCAG288392AG288393
length1,2631,227
length of high quality
(start - end)
364 (76 - 439)513 (80 - 592)
definitionCHROMAT_FILE: MSMg01no062_g14.b1 PHD_FILE: MSMg01no062_g14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:05:58 2005CHROMAT_FILE: MSMg01no062_g14.g1 PHD_FILE: MSMg01no062_g14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:05:59 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTTTACAGTGCGCGCTATAGACTCCTAAGGGAGAGGATCCGCGGAATTC
TGCACTAAACCCATCCCCTTAAGGGATTTTTTTCAGTTGGGAGACTTTTA
ATGACCCCTTCTATTTCTTTACCCCATTATGGGACTGTTTAGATGGTTTA
TCTGATCCTGATTTAACTTTGGCACCTGGTATCTGTCTAGAAAATTGTCC
AATTCATCCAGATTTTCCAGTTTTGTTGAGTATAGGTTTTTGTAATAGGA
TCTGATGATTTTTGAATTTCCTTGGTTTCTGATTTTCATTTCTGATTTTG
TTAATTTGAATAGCGTCTCTGTGCCCTCTGGTTAGTCCGGCTAGGGGGTC
TATCTATCTTGTCGATTTTCTCAAAGCACCCAAGTTCTTTTTTTTAGTTT
CCCCAAAGCCACACGGATCCTGTCTTTTTTTAAACCCTCAGATGATGCCG
AGCCTCATCTGAGTCTCTGCAGTACCACTCTGTCAGGTGTCAGACCCGAA
CCAGCACCAGCACCTTAGCCTGTCGGAGCCGAACCAGCACCAGCACCTTA
GCCTGTCGGATCCGAACCAGCACCAGCACCTTATCCTGTCGGAGCCGAAC
CAGCACCAGCACCTTAGCCTGTCGGATCCGAACCAGCACCAGCACCTTAG
TCTGTCGGAGTCGAACCAGCACCAGCACCTTAGCCTGTCGGATCCCTCTG
TCTAGACGAATCCTGAGAACATACCTGCATGCTTCCTTTACCTCAGTCTT
TGATCTTTCAATCTTCAGTAGCCCATTGTTATGCTTCATCTTGATATTGA
TTATATTCTTTATTACACTATTTGTCTATTTTTGCTTGTCCCATAATATC
ACTCTATCTATCTTTTCCCCCTGATGCTTTACCTTGTTTTCCCTAAATCC
CAGCATTTAATCCCGGTAGTGGTATCACTTCTTTTTTTTTCCTTATTTTC
TTATTTATTAATTATATTTCACTCTTTTTTATCCTATCTTTCTTTTTTTT
TCTTATCTTTTCCCTTCTTTTTTTTTCTTTTCCACTCTCTTTTTTTGATC
TCTCTTTTTTTCTCTCTTCTCTTCACTTTCCCTCTTTTTTACTATATTTT
ATCATTTCTCTCTCTCTCTTCCTCTTTCTTTTTATTTTTTTTCTCTATTC
TCTTTCTGCTTTTCTCTTTTTTAGCTCTTATAATTATCTCTTTCTCTGTC
TTCTTTGCTTTGCATTTCTTTCTTTCCTTTCTTGTCTCTTACTCTATTCT
ACTCTCCCTCCTG
TTTTTTCACAAGTGTAGCTGGGGCGCCXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCCTTTTGATTTATTTTTAGCTGGCAGTAGGAAA
AAACTGACCCAATTTTACATATCTCCCCAAGCCACAGCACGTTATTAGGA
CCTCCGGACATTGGTAGGATTTATAAAAATAATCAAATGCTATTTTTGTT
GTGCCTTCCTGAATATGATTTACAGTTTGATTCACTAAGAACAAAACAAG
ACAATAACAACAACAACAACAACAGCAACAAAAAGGTTTCTTGTTATCAG
AAATAGGCCAAGCAGCTCAAGACAGAAAAAGATACAAAGAATTGTCACGA
GTCCCCACCTCCCCAAGGGCAGAATAATGTTGAGCAGATGCAGAATATGT
ACTTTTAAAGGCTTTGATTGTTTCTCATGAGATCAGAACCAGGGGAAGGA
AGGCCATGTGTTATGACAGGAAAGGCTCAGCTACGTGTAAGGCAAGTAGA
TGCAGAGGCTGTCTAGGGATGAAGTGGGAGACTACTTATCTATGGGGTCT
TAGATTTCCCCGTGGCCTGGGGGGGGGGAATGGTTTTAATGCCACGTCCC
TGTTTTATCCTTTGTCTGTCCGTCTGTCTGTCTGTCTGTGTCCTTCTGCC
TTGATCCTTATTTTTCTCATTCCTTTTTTTTCTGCTTCTTATTTTTATTT
TTCGTCTTTTGCTTCTTCTCTTTTCTTTTTTTTTCATTTTTTTTTTTATT
TTATCTTTTCTTTTTTTTTTTTTTCTTTTCCTATTATCCTTTCTTTCTCT
TTTCTTATCTTCTCCCTACTCCTCTTCTTTCTTTCTTTTTCCATCTATCT
TCTCTTCTTATTATTTTTCTTCTTTTCCTTCTTCCTTTTCTCTTTTCCTT
TTTATTTATTTTAATTCTTTATTCTTTTTCACTTCCCTCTTTTATACTTT
CTTTATTCAATATTTTTCCCTATTCTTTTTTTTTTATCTCTCTCATTCTT
ATACTTCCCTTTTTTTTCTTTATCTTTTCTTTACTTTTTGTTTTTTTATC
TTTTTTTCATCTTGTATTGATTTCTCTCTTCCTTCTACCTTTTATCTTCT
TTCTCTCCTTTCTCTCATCTCTTTTTTTCTTTTCTTTTCTTATCTTTTTA
TATTCACTTCATTTTCCATACATCCTAACTTTAACATATATTTCATTCTA
TTTTCTCCTAATTTACTTNTCTCATTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no062_g14.g1 MSMg01no062_g14.g1 CHROMAT_FILE:
MSMg01no062_g14.g1 PHD_FILE: MSMg01no062_g14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:05:59 2005
         (513 letters)



>mm_chr5_73142331_73143244
          Length = 914

 Score =  928 bits (480), Expect = 0.0
 Identities = 504/512 (98%), Gaps = 1/512 (0%)
 Strand = Plus / Minus

                                                                       
Query: 3   tttagctggcagtaggaaaaaactgacccaattttacatatctccccaagccacagcacg 62
           |||||||||||||||||||||||||||| |||||||||||||||   |||||||||||||
Sbjct: 914 tttagctggcagtaggaaaaaactgaccgaattttacatatctctttaagccacagcacg 855

                                                                       
Query: 63  ttattaggacctccggacattggtaggatttataaaaataatcaaatgctatttttgttg 122
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 854 ttattaggacctccagacattggtaggatttataaaaataatcaaatgctatttttgttg 795

                                                                       
Query: 123 tgccttcctgaatatgatttacagtttgattcactaagaacaaaacaagacaataacaac 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 794 tgccttcctgaatatgatttacagtttgattcactaagaacaaaacaagacaataacaac 735

                                                                       
Query: 183 aacaacaacaacagcaacaaaaaggtttcttgttatcagaaataggccaagcagctcaag 242
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 734 aacaacagcaacagcaacaaaaaggtttcttgttatcagaaataggccaagcagctcaag 675

                                                                       
Query: 243 acagaaaaagatacaaagaattgtcacgagtccccacctccccaagggcagaataatgtt 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 acagaaaaagatacaaagaattgtcacgagtccccacctccccaagggcagaataatgtt 615

                                                                       
Query: 303 gagcagatgcagaatatgtacttttaaaggctttgattgtttctcatgagatcagaacca 362
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 gagcagatgcagaatatggacttttaaaggctttgattgtttctcatgagatcagaacca 555

                                                                       
Query: 363 ggggaaggaaggccatgtgttatgacaggaaaggctcagctacgtgtaaggcaagtagat 422
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 ggggaaggaaggccatgtgttatgacaggaaaggctcagctacgtgtaaggcaagtagat 495

                                                                       
Query: 423 gcagaggctgtctagggatgaagtgggagactacttatctatggggtcttagatttcccc 482
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 gcagaggctgtctagggatgaagtgggagactacttatctatggggtcttagatttcccc 435

                                           
Query: 483 gtggcctgggggggg-ggaatggttttaatgc 513
           ||||||||||||||| ||||||||||||||||
Sbjct: 434 gtggcctggggggggaggaatggttttaatgc 403


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 513
Length of database: 914
Length adjustment: 10
Effective length of query: 503
Effective length of database: 904
Effective search space:   454712
Effective search space used:   454712
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)