Query= MSMg01no062_h07.b1 MSMg01no062_h07.b1 CHROMAT_FILE:
MSMg01no062_h07.b1 PHD_FILE: MSMg01no062_h07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:06:04 2005
(794 letters)
>mm_chr5_144488218_144489412
Length = 1195
Score = 1491 bits (771), Expect = 0.0
Identities = 789/795 (99%), Gaps = 1/795 (0%)
Strand = Plus / Minus
Query: 1 tgggattacaggcatgtaaccactaagcctatgaaagacctctaccactggagctacatt 60
||||||||||||||||||||||||||| ||| | ||||||||||||||||||||||||||
Sbjct: 885 tgggattacaggcatgtaaccactaaggctaggcaagacctctaccactggagctacatt 826
Query: 61 cctgctcccactaatggtttctctttgttggatgatttgtttaaagatagtttcacttgg 120
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 825 cctgttcccactaatggtttctctttgttggatgatttgtttaaagatagtttcacttgg 766
Query: 121 ttagacacaagtttggaggacacagtgactggcaagtagactgctctgttcactctttga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 765 ttagacacaagtttggaggacacagtgactggcaagtagactgctctgttcactctttga 706
Query: 181 aacaaatgtactttttgtcttttgcagggttgaaaaatgaccatagttgacaaaactgaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 705 aacaaatgtactttttgtcttttgcagggttgaaaaatgaccatagttgacaaaactgaa 646
Query: 241 ccttcagacccatcaacctgtcagaaccagcctggcagttgtgaggcggtctcacctgaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 645 ccttcagacccatcaacctgtcagaaccagcctggcagttgtgaggcggtctcacctgaa 586
Query: 301 gacatggacacaggctctgccagctggggcgctgtgtcttcaataagtgatgtctcaagt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 585 gacatggacacaggctctgccagctggggcgctgtgtcttcaataagtgatgtctcaagt 526
Query: 361 cacacacttccattagggccagtgcctggtgctgtagtttattctaactcgtctgtacct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 cacacacttccattagggccagtgcctggtgctgtagtttattctaactcgtctgtacct 466
Query: 421 gaaaaatcaaagccatcaccaccaaaggatcaaggtatgagtacagagttactgccgcca 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 gaaaaatcaaagccatcaccaccaaaggatcaaggtatgagtacagagttactgccgcca 406
Query: 481 ggggctcccatgccggggattcagaagggcattggtccaagattgacaccatttcatttt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 ggggctcccatgccggggattcagaagggcattggtccaagattgacaccatttcatttt 346
Query: 541 gctctaatgagcattcattcatttatctaccacacccacccacagatcattattaccatg 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 gctctaatgagcattcattcatttatctaccacacccacccacagatcattattaccatg 286
Query: 601 tataacaaataggatagattgatttttaattgtcagatgaatttttttt-aaattcccaa 659
|||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 285 tataacaagtaggatagattgatttttaattgtcagatgaatttttttttaaattcccaa 226
Query: 660 tttcttgaaggatagacttttatcttggcctcagactcattatgtagccaaagctggcct 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 225 tttcttgaaggatagacttttatcttggcctcagactcattatgtagccaaagctggcct 166
Query: 720 gattgttttgtcttcttgattctcttgtctctgaatgccgggatcacaggggcattgtgt 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 165 gattgttttgtcttcttgattctcttgtctctgaatgccgggatcacaggggcattgtgt 106
Query: 780 ggggatcaaacccag 794
|||||||||||||||
Sbjct: 105 ggggatcaaacccag 91
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 794
Length of database: 1195
Length adjustment: 10
Effective length of query: 784
Effective length of database: 1185
Effective search space: 929040
Effective search space used: 929040
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no062_h07.g1 MSMg01no062_h07.g1 CHROMAT_FILE:
MSMg01no062_h07.g1 PHD_FILE: MSMg01no062_h07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:06:04 2005
(620 letters)
>mm_chr5_144405758_144406777
Length = 1020
Score = 1176 bits (608), Expect = 0.0
Identities = 617/620 (99%), Gaps = 1/620 (0%)
Strand = Plus / Plus
Query: 2 cttgctgaccctggggctcattggctagactgattggctagctagtattggaatgctcct 61
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 201 cttgctgaccctggggctcattggctagactgattggctagctagtactggaatgctcct 260
Query: 62 gttttg-ccccccgccccacccctgtactggggtaacggagactcatggctgctgggtgc 120
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gttttgcccccccgccccacccctgtactggggtaacggagactcatggctgctgggtgc 320
Query: 121 tggagagctgaacttgggtcatgcttgtggtgcagcaaatgtttccccagtgaagttctc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tggagagctgaacttgggtcatgcttgtggtgcagcaaatgtttccccagtgaagttctc 380
Query: 181 tccccagctcttttttaggaagtatttaagcaggtggcattttgtgtaggatactgatgg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tccccagctcttttttaggaagtatttaagcaggtggcattttgtgtaggatactgatgg 440
Query: 241 gagaggaggaccatatttatttaaaattttgataacctataattcaccccaaaattcttg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gagaggaggaccatatttatttaaaattttgataacctataattcaccccaaaattcttg 500
Query: 301 tgaggtatttaaagctagatctttatgaatttcttagaggttggagatgagttagggtct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgaggtatttaaagctagatctttatgaatttcttagaggttggagatgagttagggtct 560
Query: 361 gagcaaaggcataggtatctctcaaaggcatgctttctccaggctctcggttggatctgt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gagcaaaggcataggtatctctcaaaggcatgctttctccaggctctcggttggatctgt 620
Query: 421 ggtaaacagcaacgaagggagagagaggccccacagcagcagctcaggtcagcagtgacg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ggtaaacagcaacgaagggagagagaggccccacagcagcagctcaggtcagcagtgacg 680
Query: 481 gagagagaatttatggggcctttaaccccggtgctctggaggcagaggcagaggagtctg 540
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 681 gagagagaatttatggggcctttaaccccggtgctctggaggcagaggcaggggagtctg 740
Query: 541 tgagtgtgagactagcctggtctacagtaccaggccagccagggctgcacagggagatca 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tgagtgtgagactagcctggtctacagtaccaggccagccagggctgcacagggagatca 800
Query: 601 tgtctagggagaaagaataa 620
||||||||||||||||||||
Sbjct: 801 tgtctagggagaaagaataa 820
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 620
Length of database: 1020
Length adjustment: 10
Effective length of query: 610
Effective length of database: 1010
Effective search space: 616100
Effective search space used: 616100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
