Query= MSMg01no062_l19.b1 MSMg01no062_l19.b1 CHROMAT_FILE:
MSMg01no062_l19.b1 PHD_FILE: MSMg01no062_l19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:06:38 2005
(634 letters)
>mm_chr5_53827137_53828170
Length = 1034
Score = 1201 bits (621), Expect = 0.0
Identities = 630/633 (99%)
Strand = Plus / Plus
Query: 2 catgcatgcacacattaaaaaccacttgccacaccaactgccataaccttattgattccc 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 catgcatgcacacattaaaaaccacttgccacaccaactgccataaccttattgattccc 261
Query: 62 agaacccacatagaggtgaaaggaaaaacagagaccacaagataacacaaagttgttttc 121
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 262 agaacccacatagaggtgaaaggaaaaacagaggccacaagataacacaaagttgttttc 321
Query: 122 tggcttccacatgtacactgtgacacttttactgacacaataataataatagtgtcccat 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 tggcttccacatgtacactgtgacacttttactgacacaataataataatagtgtcccat 381
Query: 182 catttggaaaagggtagcatagctggagaattggaggtacagactagattctcatagtca 241
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 382 catttggaaaagggtagcatagccggagaattggaggtacagactagattctcatagtca 441
Query: 242 tcagcaaacagatgaataaatgtcacttattttgacttatccttaacacgggcttaagag 301
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 442 tcagcaaacagatgaataaatgtcacttatgttgacttatccttaacacgggcttaagag 501
Query: 302 acatggtcctatgaagaggtatatagctatgggtaattgtgcctaacaccttcagtattt 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 acatggtcctatgaagaggtatatagctatgggtaattgtgcctaacaccttcagtattt 561
Query: 362 atagtaatcattttattaatggagacagatgttagcctctgacatgacaaaagaaattag 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 atagtaatcattttattaatggagacagatgttagcctctgacatgacaaaagaaattag 621
Query: 422 aaatgcaacaaaagtccaaatcacaaccacatacaaatatatccttgtttaagccaaagc 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 aaatgcaacaaaagtccaaatcacaaccacatacaaatatatccttgtttaagccaaagc 681
Query: 482 gatatccactgctgagattcaaacacacatccatccatatttattgatttgtctataatg 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 gatatccactgctgagattcaaacacacatccatccatatttattgatttgtctataatg 741
Query: 542 tactagatgctgtgttggacccagaggacagagtgaaagaagggtgcattaagtcccagc 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 tactagatgctgtgttggacccagaggacagagtgaaagaagggtgcattaagtcccagc 801
Query: 602 cctaaactgatgtggtgattcacacatgtaatc 634
|||||||||||||||||||||||||||||||||
Sbjct: 802 cctaaactgatgtggtgattcacacatgtaatc 834
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 634
Length of database: 1034
Length adjustment: 10
Effective length of query: 624
Effective length of database: 1024
Effective search space: 638976
Effective search space used: 638976
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no062_l19.g1 MSMg01no062_l19.g1 CHROMAT_FILE:
MSMg01no062_l19.g1 PHD_FILE: MSMg01no062_l19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:06:38 2005
(587 letters)
>mm_chr5_53979037_53980023
Length = 987
Score = 1015 bits (525), Expect = 0.0
Identities = 582/627 (92%), Gaps = 40/627 (6%)
Strand = Plus / Minus
Query: 1 tggtgctgtgtaggactagtgtcttgctagcatcatgcacccacaaatgaagactgggtt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 tggtgctgtgtaggactagtgtcttgctagcatcatgcacccacaaatgaagactgggtt 616
Query: 61 ttgacatttaaaggacagtgaaccctctaatagctaatgtctcctggttgaaataaagct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 ttgacatttaaaggacagtgaaccctctaatagctaatgtctcctggttgaaataaagct 556
Query: 121 ttgcttactgaaggtttgttaagggtatgcgatatgtgtttgcctatcgctttatttatt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 ttgcttactgaaggtttgttaagggtatgcgatatgtgtttgcctatcgctttatttatt 496
Query: 181 tacttcccatttttaaaaggacctatgcccatttaatacgctatgtcaaaacatgtctca 240
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 495 tacttcccatttttaaaaggacgtatgcccatttaatacgctatgtcaaaacatgtctca 436
Query: 241 tccagaacaagagagtgctgcttaggtaaaatgcctttaaacgtttcctcaaggattttt 300
||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||
Sbjct: 435 tccagaacaagagagtgttgcggaggtaaaatgcctttaaacgtttcctcaaggattttt 376
Query: 301 aggcctagtgtgacggtttgtgacactaatgttggacggaaggccatgagaccttggaaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 aggcctagtgtgacggtttgtgacactaatgttggacggaaggccatgagaccttggaaa 316
Query: 361 gccttgatagtcataaaactaatctcaactcaaacgctccacctaaggtgttttcctttc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 gccttgatagtcataaaactaatctcaactcaaacgctccacctaaggtgttttcctttc 256
Query: 421 tcagtaatgccaattcctttgccctcacttaagaggaccttggaattacttttgc----- 475
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 tcagtaatgccaattcctttgccctcacttaagaggaccttggaattacttttgctttta 196
Query: 476 -----------------------------------atatatatcacacattcaggattgc 500
|||||||||||||||||||||||||
Sbjct: 195 tatatatatatatatatatatatatatatatatatatatatatcacacattcaggattgc 136
Query: 501 accggcaagaaaaatcatgctagtcagatctattagtctattttctaatccataatatgt 560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135 accggcaagaaaaatcatgctagtcagatctattagtctattttctaatccataatatgt 76
Query: 561 aaggaacggaagctaatattgctccca 587
|||||| ||||||||||||||||||||
Sbjct: 75 aaggaaaggaagctaatattgctccca 49
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 587
Length of database: 987
Length adjustment: 10
Effective length of query: 577
Effective length of database: 977
Effective search space: 563729
Effective search space used: 563729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
