BAC Information

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BAC

Clone NameMSMg01-063D03
Chromosome5 (Build37)
Map Location 93,505,463 - 93,505,906
singlet/doubletsinglet
Overlap genenone
Upstream geneG3bp2, Vdp, LOC100040605, U90926, Ppef2, Asahl, Sdad1, Cxcl9, Cxcl10, Cxcl11, LOC100040228, Art3, Nup54, Scarb2, Gm1381, D5Ertd593e, 4932413O14Rik, Shroom3, LOC623798, Ankrd56
Downstream geneSept11, Ccni, LOC100040826, 2010109A12Rik, Ccng2, LOC632115, EG330129, LOC100040885, LOC666064, LOC100040909, C87414, LOC666075, LOC666077, LOC666081, EG665802, LOC100040408, LOC100040981, EG622719, LOC100041003, BC061212
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-063D03.T7 (MSMg01no063_d03.b1)MSMg01-063D03.TJ (MSMg01no063_d03.g1)
ACCAG288992AG288993
length659831
length of high quality
(start - end)
444 (85 - 528)234 (187 - 420)
definitionCHROMAT_FILE: MSMg01no063_d03.b1 PHD_FILE: MSMg01no063_d03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:07:28 2005CHROMAT_FILE: MSMg01no063_d03.g1 PHD_FILE: MSMg01no063_d03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:07:28 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATGATCCGCGGAATTCTTTCTCTTCCTTCCTGACCCCACCTTCTGCTTCC
TGCCTCAGCACACCGGCCATAGGCTCTTTCACTGACAGGTGTTGCTATGT
GATAGTCTCTCTACAGAAAACAGCTGGTTGCATCACTGTTGGTACATCCA
TAGTGAAGAGTAAAGAGAGATACATGCATGCTTGCTTACTGCTTCTTGAT
TGGTGCTTGTCTTCATCAGGGTTTCTATTCGTGCACAAACATCATGACCA
AGAAGCAAGTTGGGGAGGAAAGGATTTATTCGGCTTATACTTCCATACTG
CTGTTCATCACCAAAGGAAGTCAGGACTGGAACTCAAGCAGGTCAGGGAG
CAGGAGCTGATGCAGAGGCCATGCAAGGATGTTCTTTATTGGCTTGCTTG
CCCTGGCTTGCTCAGCCTGCTCTCTCATAGAACCAAGACTCCCAGCCCAG
AGATGGTCACACCCACAAGGTACCTTTTCCCCTTGATCACTAATTGAGAA
AATGCCTTACAGTTGTATCTCATGGAGGCATTTCCTCAACTGAAGCTCCT
TTCTCTGTGATAACTCCAGCTGTGTCAAGCTGACACAAAACTACCCAGTA
CAGTGCTTGTGCTTGGTCCCTTTTATAGAACTCATGACCCCCTGCCCCAG
TAATGCTTG
NNNNNNNNNNNNNNNNNNNNNNTTTTTTTTTTNNTNCNNCTTNCCNTTTT
CCTTTTCACCATCGATGATATGAXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGAAGACTTTTCA
GAGGGTCTATAAATGCTAGAGCCCCAAGAATCCCGCTAAGGTGTTGGCTG
GTTGCTGTTGGTTGTTGTTGGTCAGTTTCTTAAGTAGTTATGCATAAAGA
AGAAAATTAGATATCCTGACATTGAAGAGTAAACTTGCCCCAAGAAACTC
AATACCCCTAATCATAAGACATAGTCTAAAGATAACCTTGCCCTGTTTCC
TTTCTATCCTGTTTTCTCTCCTTTCTAGTGTTAGGGGGTTGAAAGGGTGG
GGAAAAGGTGGAAAAGGGTGTTATTATTTCCCCCCCCCCCCCTTCCCTTA
TTATCTACCTTTTCTTTCGTCCTTCCCTCCCCCCCCACAATAATAATAAT
ATTTCTTCCCGTTATCTTATTATTTTTTCTTCTCTTTATCTTCTTTTCTT
CTTTTCCCTCTTTTTATCTATATTTTTATCTTCTTTTCTTTCTTTCTATT
CTTCTTTCCCTTGCTGCCTAACCCCCTTTTTTTTCTTCCTATCTTTTCTA
TTTCCACTACCCTACCCTCATTCCCCCCCCTTTTTCACGTTTTATTTTTT
TTTCCTACTTCACCTCACTTCTCTATCTTATTATACTCCACCTTTCATCC
CAACCACATTCTCATCCATCTTACTATCATAAAAAATTCCCTCTTTTTTT
CCTCACATTCCTTTCCTACTCCCTCTTTTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no063_d03.b1 MSMg01no063_d03.b1 CHROMAT_FILE:
MSMg01no063_d03.b1 PHD_FILE: MSMg01no063_d03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:07:28 2005
         (444 letters)



>mm_chr5_93505263_93506106
          Length = 844

 Score =  820 bits (424), Expect = 0.0
 Identities = 439/444 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   acaggtgttgctatgtgatagtctctctacagaaaacagctggttgcatcactgttggta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acaggtgttgctatgtgatagtctctctacagaaaacagctggttgcatcactgttggta 260

                                                                       
Query: 61  catccatagtgaagagtaaagagagatacatgcatgcttgcttactgcttcttgattggt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 catccatagtgaagagtaaagagagatacatgcatgcttgcttactgcttcttgattggt 320

                                                                       
Query: 121 gcttgtcttcatcagggtttctattcgtgcacaaacatcatgaccaagaagcaagttggg 180
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 321 gcttgtcttcatcagggtttctattcctgcacaaacatcatgaccaagaagcaagttggg 380

                                                                       
Query: 181 gaggaaaggatttattcggcttatacttccatactgctgttcatcaccaaaggaagtcag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaggaaaggatttattcggcttatacttccatactgctgttcatcaccaaaggaagtcag 440

                                                                       
Query: 241 gactggaactcaagcaggtcagggagcaggagctgatgcagaggccatgcaaggatgttc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct: 441 gactggaactcaagcaggtcagggagcaggagctgatgcagaggccatggagggatgttc 500

                                                                       
Query: 301 tttattggcttgcttgccctggcttgctcagcctgctctctcatagaaccaagactccca 360
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tttactggcttgcttgccctggcttgctcagcctgctctctcatagaaccaagactccca 560

                                                                       
Query: 361 gcccagagatggtcacacccacaaggtaccttttccccttgatcactaattgagaaaatg 420
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 561 gcccagagatggtcacacccacaagggaccttttccccttgatcactaattgagaaaatg 620

                                   
Query: 421 ccttacagttgtatctcatggagg 444
           ||||||||||||||||||||||||
Sbjct: 621 ccttacagttgtatctcatggagg 644


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 444
Length of database: 844
Length adjustment: 10
Effective length of query: 434
Effective length of database: 834
Effective search space:   361956
Effective search space used:   361956
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)