TGCGCCGCTATACGACTCCTATACGGAGAGGATCCGCGGAATTCATTTTA
TGCCAGCCTGGGCTGTGTACAGTGTTCCTGTCTCAAAAAAACAAAGACAA
GCAAAAAAAAACAAAATAAGCCCCAACTACTATAAGTCATATTGCAAACA
ATGGGAAAAACAGTCGACTGATAGAATTTTCTACATTGTGCGCTGTGAGT
GTGTAAGGAACACTATTCAATGATTTTCTATATTGTGTGCTGTGAGTGTG
TAAGGAACACTATTCAGTGAGCTAATTGGTTTTATGAATCATCTCATTTA
CTACCAGCTGTGGCTTATGATTTCCTATGTAGGCCATTGAATCTCATTTA
AAAACAGTTTTATTTTTTTAAATGAGTTTTAGTTATATAGATTCACAAGC
TTTGTAGGCTACTACAGAGACCAGTTTTGAATGGTGAGGATGGGTGTCTC
TTAGGGAGAGAAAGAGGCCATTGTCACTATATGTTAAAGATGATTCTGTG
TAATTAATGAGGGATTTATAAACATTAATATTCTTTTTGTTCACATATAT
GTGTGTATTTGTGTGATATATATGTATATATGTATATATATATACATATA
TATGCATATGTGCATCCCTCTTCCACACATTAATACGAAAAATATTAAAA
CACCATACTACTCCATCCTACT

AATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCTTAAACCACTTAGATTTGACCTTAGTAC
AAGGAGACACCCAGGGATCCACCCCATAATCAGACTCCAAACACAGACAC
CATTGCATACTCCAGCAAGATTTTGCTGAAAGGATCCTGATATAGCTGTC
TCTTGTGAGGCTATGCCAGTGCCTGGCAAACACAGAAGTGGATGCTCACA
GTCAGCTATTGGATGCAACACAGGGTCTCCAATGGAGGAGCTAGAGAAAG
TACCCAAGGAGCTAAAGGGGTCTGCAACCCTATAGGTGGAACAACAGTAT
GAACTAACAAGTACCCCCAGAGCTAATGTCTCTAGCTGCATATGTAGCAG
AATATGGCCTAGTAGGCCATCATTGGGAAGAGAGGCCCCTTGGTTTTGTA
AACTTTGTCTGCCTCAGTACAGGGGAACACCAGGGCCAAGAAGTGGGAGT
GGGTGGGTAGGAGAGTTGTCTCCTCTTTCCCTTTACCCACTCACCACATT
CTCATACCCCCTAAACTACTTATTTCACCACCACTCCCACACCACCTTCC
CATATTCCCTCACCTCCTTCCCTATTCTTTTTCTATACTCTACATCCTCT
CTTCCACCCTACCTTTTTACCGCCTTTC

Query= MSMg01no063_e01.b1 MSMg01no063_e01.b1 CHROMAT_FILE:
MSMg01no063_e01.b1 PHD_FILE: MSMg01no063_e01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:07:32 2005
         (572 letters)



>mm_chr5_5297828_5298799
          Length = 972

 Score = 1004 bits (519), Expect = 0.0
 Identities = 549/561 (97%), Gaps = 6/561 (1%)
 Strand = Plus / Minus

                                                                       
Query: 15  gaattcattttatgccagcctgggctgtgtacagtgttcctgtctcaaaaaaacaaagac 74
           |||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 776 gaattcattttaggccagcctgggctgtgtacagtgttcctgtctc-aaaaaacaaagac 718

                                                                       
Query: 75  aagcaaaaaaaaacaaaataagccccaactactataagtcatattgcaaacaatgggaaa 134
           |||||||| |||  ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 717 aagcaaaataaaggaaaataagccccaactactataagtcatattgcaaacaatgggaaa 658

                                                                       
Query: 135 aacagtcgactgatagaattttctacattgtgcgctgtgagtgtgtaaggaacactattc 194
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 657 aacagtcgactgatagaattttctacattgtgcactgtgagtgtgtaaggaacactattc 598

                                                                       
Query: 195 aatgattttctatattgtgtgctgtgagtgtgtaaggaacactattcagtgagctaattg 254
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 597 agtgattttctatattgtgtgctgtgagtgtgtaaggaacactattcagtgagctaattg 538

                                                                       
Query: 255 gttttatgaatcatctcatttactaccagctgtggcttatgatttcctatgtaggccatt 314
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 gttttatgaatcatctcatttactaccagctgtggcttatgatttcctatgtaggccatt 478

                                                                       
Query: 315 gaatctcatttaaaaacagttttatttttttaaatgagttttagttatatagattcacaa 374
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 gaatctcatttaaaaacagttttatttttttaaatgagttttagttatatagattcacaa 418

                                                                       
Query: 375 gctttgtaggctactacagagaccagttttgaatggtgaggatgggtgtctcttagggag 434
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 gctttgtaggctactacagagaccagttttgaatggtgaggatgggtgtctcttagggag 358

                                                                       
Query: 435 agaaagaggccattgtcactatatgttaaagatgattctgtgtaattaatgagggattta 494
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 agaaagaggccattgtcactatatgttaaagatgattctgtgtaattaatgagggattta 298

                                                                       
Query: 495 taaacattaatattctttttgttcacatatatgtgtgtatttgtgtgatatatatgtata 554
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 taaacattaatattctttttgttcacatatatgtgtgtatttgtgtgatatatatgtata 238

                                
Query: 555 tat----gtata-tatatata 570
           |||    ||||| ||||||||
Sbjct: 237 tatatatgtataatatatata 217


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 47
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 572
Length of database: 972
Length adjustment: 10
Effective length of query: 562
Effective length of database: 962
Effective search space:   540644
Effective search space used:   540644
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)