Query= MSMg01no063_l11.b1 MSMg01no063_l11.b1 CHROMAT_FILE:
MSMg01no063_l11.b1 PHD_FILE: MSMg01no063_l11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:08:11 2005
(635 letters)
>mm_chr5_15592366_15593400
Length = 1035
Score = 1174 bits (607), Expect = 0.0
Identities = 625/631 (99%)
Strand = Plus / Plus
Query: 5 gaattccagagaacattgaatcagcttttggatctatgtacgtccccccaaaaagccaaa 64
||||||||||||| ||||||||||||||||||||||||||| |||||| |||||||||||
Sbjct: 205 gaattccagagaagattgaatcagcttttggatctatgtacatcccccaaaaaagccaaa 264
Query: 65 agacctataataaatgggatttacactctcttaaatgaaatctaaatgcagtctttgtta 124
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 agacctatagtaaatgggatttacactctcttaaatgaaatctaaatgcagtctttgtta 324
Query: 125 gaggcataaaaactatccagataccaaacaataggaaaggataaatttttagtatgcatg 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gaggcataaaaactatccagataccaaacaataggaaaggataaatttttagtatgcatg 384
Query: 185 ggttaggtttggcctcggggatcttacatcaaatatgactgcgtttgcatcccattagca 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ggttaggtttggcctcggggatcttacatcaaatatgactgcgtttgcatcccattagca 444
Query: 245 aaattgtaaagtagtgtttagaacttatacatcgagatttagcatttcaatttgaaaact 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aaattgtaaagtagtgtttagaacttatacatcgagatttagcatttcaatttgaaaact 504
Query: 305 agtgctttgtctgtagtgagcagatgctcaactgaggatggagagacctaatgcaattaa 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 agtgctttgtctgtagtgagcagatgctcaactgaggatggagagacctaatgcaattaa 564
Query: 365 aagatgtttctaggtgggaggagatcattcagccatgtatcgcctgtcagatccaccttg 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 aagatgtttctaggtgggaggagatcattcagccatgtatcgcctgtcagatccaccttg 624
Query: 425 gccagctttctatatgacagatgcagttagattttcctaagactattcagccagccatta 484
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gccagctttctgtatgacagatgcagttagattttcctaagactattcagccagccatta 684
Query: 485 atttggcaacagtccctccaacaataacttataagacctgggcttgggaggggatttata 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 atttggcaacagtccctccaacaataacttataagacctgggcttgggaggggatttata 744
Query: 545 agcccccttttaatatagcagagatctgatgtgtcacggccatgatacgagcatgcctga 604
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 agccccctttgaatatagcagagatctgatgtgtcacggccatgatacgagcatgcctga 804
Query: 605 taggagaataacatcagtggcttttcaggag 635
|||||||||||||||||||||||||||||||
Sbjct: 805 taggagaataacatcagtggcttttcaggag 835
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 635
Length of database: 1035
Length adjustment: 10
Effective length of query: 625
Effective length of database: 1025
Effective search space: 640625
Effective search space used: 640625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no063_l11.g1 MSMg01no063_l11.g1 CHROMAT_FILE:
MSMg01no063_l11.g1 PHD_FILE: MSMg01no063_l11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:08:11 2005
(606 letters)
>mm_chr5_15728860_15729872
Length = 1013
Score = 835 bits (432), Expect = 0.0
Identities = 584/690 (84%), Gaps = 90/690 (13%)
Strand = Plus / Minus
Query: 1 aatcacatcaaggtgaaatctggaaattgagattcagaattaagtttagtgaagtggtgt 60
||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 689 aatcatatcaaggtgaaatctggaaattgagattcggaattaagtttagtgaagtggtgc 630
Query: 61 aagctactctcggccgcataggaagctggcataaaagtcgactgaatgcaggaggcccgt 120
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 629 aagctactctcggccgcataggaagctggcataaaggtcgactgaatgcaggaggcccgt 570
Query: 121 gccagcctcctcggcaacaatgtgagatttctatctcacaccaaagcagcagcagtagca 180
|||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||
Sbjct: 569 gccagcctcctcggcaacaatgtgagatttctatctcaaaccaaagcagcagcaggagca 510
Query: 181 gcaacaaacaacaataat--t--t--taa-aaaaaacagcaaaacaatacaaaacagaaa 233
||||||||||| |||||| | | ||| ||||||||||||||||||||||||||||||
Sbjct: 509 gcaacaaacaataataataataataataataaaaaacagcaaaacaatacaaaacagaaa 450
Query: 234 aaaatcaatcctgaattaaatgcaaagaataatctaataaatatctattgagcgtccaaa 293
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 449 aaaatcaatcctgaattaaatgcaaagaataatctaataaatatctattgagcgtcc-aa 391
Query: 294 g-agttctaaagcatatgccacaaggatggaggacaaacagttctgagccatctccacag 352
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 gtagttctaaagcatatgccacaaggatggaggacaaacagttctgagccatctccacag 331
Query: 353 ggatagtggaaaacccgttctaaaacatgtgctgcaggaatggtgtaaaaatcgttctaa 412
|||||||||| |||||||||||||||||||||||||||||||| ||||||| |||||||
Sbjct: 330 ggatagtggagaacccgttctaaaacatgtgctgcaggaatggcataaaaatagttctaa 271
Query: 413 acatatacagccggggctgaacagaaaaaccaagatgaactttcattcctcgtgttacat 472
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 270 acatatacagccggggctgaacagaacaaccaagatgaactttcattcctcgtgttacat 211
Query: 473 ttactctctt-------------------------------------------------- 482
||||||||||
Sbjct: 210 ttactctcttgggggtgggtgggtatgggggacttttggtatagcattggaaatgtaaat 151
Query: 483 -------------------------------aagattttcatcctatagcaagtgctctg 511
|||||||||| ||||||||||||| ||||
Sbjct: 150 gagctaaatacctaataaaaaatgggaaaaaaagattttcagcctatagcaagtgttctg 91
Query: 512 tccaagaaaactgaatttgttctgcctcggatgccataacgaatatcacaacttgatggc 571
|||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 90 tccaagaaaattgaatttgttctgcctcagatgccataacgaatatcacaacttgatggc 31
Query: 572 ttagacaacaggtatctattttcgcacagt 601
||||||||||||||||||||||||||||||
Sbjct: 30 ttagacaacaggtatctattttcgcacagt 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 606
Length of database: 1013
Length adjustment: 10
Effective length of query: 596
Effective length of database: 1003
Effective search space: 597788
Effective search space used: 597788
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
