BAC Information

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BAC

Clone NameMSMg01-063N10
Chromosome5 (Build37)
Map Location 148,485,834 - 148,486,132
singlet/doubletsinglet
Overlap geneFlt1
Upstream geneUsp12, 1700041I07Rik, Rpl21, Rasl11a, LOC100039699, LOC627218, Gtf3a, Mtif3, Lnx2, Rpo1-3, Gsh1, Pdx1, Cdx2, EG231903, LOC622952, Flt3, Map1lc3-ps3, LOC384254, LOC100039805, Pan3
Downstream geneLOC100039825, Pomp, Slc46a3, C130038G02Rik, LOC100041819, Slc7a1, LOC100041842, Ubl3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-063N10.T7 (MSMg01no063_n10.b1)MSMg01-063N10.TJ (MSMg01no063_n10.g1)
ACCAG289475AG289476
length666655
length of high quality
(start - end)
299 (54 - 352)283 (55 - 337)
definitionCHROMAT_FILE: MSMg01no063_n10.b1 PHD_FILE: MSMg01no063_n10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:08:22 2005CHROMAT_FILE: MSMg01no063_n10.g1 PHD_FILE: MSMg01no063_n10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:08:22 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTAGACT
ACCTGAGTTCAAAGGGCTCCTAAGAACTTCTAGAAGCCTGCAGATAGGGC
AGAGCCAACCCACCTGACTCGTCTAAACAGAGAACATCAAGGCATTGATT
CTACATTCAAAACATTTTTAAATTCCTGTTGCTTGGTGCCTTTGATTGTT
TCTCTATGGACAATTGGTGTGACCATTTGTGTAATTAATAAGAACTCCAC
ATGAGCCCACAATAGGAGCCTCTATTTTTATTTTTATCAGATTTAGTGGA
TCCGACTTACAAGGGTTCTCATACTTGAACTTCTTTTTGTTTTACTTTGT
TTTGCTTCCGCTTTTTGAGACGGGGTTTCGAGACAGCCCTGGCTGTCCTG
CAACTCACTCTGTAGACCAGGCTGATCTTGAACTCAGAGATCTGCCTGCC
TCAGCCTCCCCAGTGCTGGGAGTAAAGTCGTGCGCCACCACGTCCAGCTG
AGTTCTTGCTCTTCTCATGGAAGCTTAATGAAAACACTTAACAAACAGTT
CGGTGGACTAAGCCAGACTGGAACCTCTGAGTTAGTTCTTAAGACCCTAT
GTTCATCATCACCCCTAATGCGACAATAAGCCCACACTTTTCTTTTCTTC
ATTTACCTTATTTCCC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXTCTCACCTGTCTTGGAGTAGCTGGTGTTGGCATTTGAGTCACAGCC
CTTTTTCTAGCCTCTGTCAGCCACCGTTTTCCATCCCGGAGGGTATATCT
CAAGTAGACCACTTCCATCTGACATAGCTGGGCTTTTTTAGCAGAGGCCC
AGTAACCCAACTCACCCAGTTCTGCTAGCAATCTCTTGGTCCCCTGCCAG
CATTCTCTCTCCGTGGTTGCAGCAAGGAGCAAGTCATCAACATATTGAAG
CAGAGTTACCTGGGAGTCTTCAGCTCAGAAGGAGGCTAAATCTCGATGTA
CAGCCTCATCAAAAAGGGTGGGGGAGTTTTTGAACCCCTGGGCCAACTGT
GTCCAGGTCAATTGTCCCGTTTGTCCAGTGTCAGGATCTCTCCACTCAAA
GGCGAATATGGGCTGGCTGGAGGGATGTAACTTCAGGCAAAAGAAAGCAT
CTTTTAAATCAAGTACTGTGCACCATTTTCGCTCCGGAGGTAGTAAGCTG
AGGAGGCTATAGGGATTATGACCAGTTGTCTGAATATCTCGGAGTCTCTT
TATTGATCCCCCCCCTGTCCTGGATTGTTCCGCTTTCTCCCTTGCCTCCC
CCCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no063_n10.b1 MSMg01no063_n10.b1 CHROMAT_FILE:
MSMg01no063_n10.b1 PHD_FILE: MSMg01no063_n10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:08:22 2005
         (299 letters)



>mm_chr5_148485634_148486332
          Length = 699

 Score =  532 bits (275), Expect = e-155
 Identities = 293/299 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgagttcaaagggctcctaagaacttctagaagcctgcagatagggcagagccaacccac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 499 tgagttcaaagggctcctaagaacttctagaagcctgcagatagggcagagccaagccac 440

                                                                       
Query: 61  ctgactcgtctaaacagagaacatcaaggcattgattctacattcaaaacatttttaaat 120
           ||||||||||||||||||||||||||||||||||||| ||| ||||||||||||| ||| 
Sbjct: 439 ctgactcgtctaaacagagaacatcaaggcattgattttactttcaaaacattttaaaac 380

                                                                       
Query: 121 tcctgttgcttggtgcctttgattgtttctctatggacaattggtgtgaccatttgtgta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 tcctgttgcttggtgcctttgattgtttctctatggacaattggtgtgaccatttgtgta 320

                                                                       
Query: 181 attaataagaactccacatgagcccacaataggagcctctatttttatttttatcagatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 attaataagaactccacatgagcccacaataggagcctctatttttatttttatcagatt 260

                                                                      
Query: 241 tagtggatccgacttacaagggttctcatacttgaacttctttttgttttactttgttt 299
           |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 259 tagtggatccgacttacaagcgttctcatacttgaacttctttttgttttactttgttt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 299
Length of database: 699
Length adjustment: 9
Effective length of query: 290
Effective length of database: 690
Effective search space:   200100
Effective search space used:   200100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)