BAC Information

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BAC

Clone NameMSMg01-064J16
Chromosome5 (Build37)
Map Location 52,498,642 - 52,498,943
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041059, Ppargc1a
Downstream geneDhx15, Sod3, Gm447, LOC100041805, Lgi2, LOC545750, D5Ertd135e, Pi4k2b, Zcchc4, Anapc4, Slc34a2, 2310045A20Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-064J16.T7 (MSMg01no064_j16.b1)MSMg01-064J16.TJ (MSMg01no064_j16.g1)
ACCAG290030AG290031
length694729
length of high quality
(start - end)
319 (9 - 327)43 (393 - 435)
definitionCHROMAT_FILE: MSMg01no064_j16.b1 PHD_FILE: MSMg01no064_j16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:09:39 2005CHROMAT_FILE: MSMg01no064_j16.g1 PHD_FILE: MSMg01no064_j16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:09:39 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTTCCTATAGGGAGAGGATCCGCGGAATTCAATAAACGTTGTTTTAAAAA
AGCTAATTATTTGTTACAATAACCAGCTACTCGCGCCACTTTGTATTTGG
AGGTTTGTAAACTACTTCCATTTGAAACGTAATTGATTCCATTTTTATCA
TTTGTTCAAGTTTATGTGGTTGTTCTCCTCCTAAGAGATGATAACATCTA
TTTTCAGCAAATTATACATTATAATTCCTCATTCAAAAGCTGTAACGGAA
AACAGAATGCTAATTTATGCTGTAAACGAAACTACGGATTCTTTTTTTCT
CATTGTTAACATTAGGGACAAACCGTTATTGGTAATTTAAANACGAANAC
CATGTGGTTATTGTTGTTGNTGGGTCTCCTTCCTTTAAATTCCTAACTTT
AAACGGGCGGTCGGGGTCCTAACGCTATTTCCCCCGAGAGATTTCTTGGG
TGTCTTGTCTTCTTCTGGTATAGACCAGACATTGCCTTTATCTTTAGCTA
TTACCTGCAGCTCGATTTCAAATGTACAGGAAGACGAGCTCACAAAGCAA
TCAGAAGTGCGCTCTACAGAGGGAAGCATATTAGAGCCACACACCTTCTT
CTCCACATTTCATTAAGTCTCTGTTTCTACATCTCCCTACACATCAGCCA
TCTTCCCCGTACCTCACCCCAGGCCCCTCTAAAGCCCCTTCTGG
ATCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXATAAATACCCCAAGTTCGGTGGGGG
CTGGTTGCCTGCATTTATACGGAAAGAAAAGGTAAATTTTCGTTAACGGG
TAAGAAAAACCAAAAATAGGGGGTTTTTCGGAACGAATGGTCCCCCCTTC
GGGTTGGGGAAAAATAACGTCAGGCCCGGAAGTTCAAAGAATTCCCCCAA
GGCCTTCTTTTAAGACAAGAACCATGGTTCGAACTTAAAAAAAGCAGAAG
AAGGGGAAGGTGGTCCCAGGGGAATTTTCGGTCGGGGGAACGAAGGGAAA
GGGGTAAGGATTTTAATGGTTACCCCCCCCGCCCCCTAAGGAAAAAAAGG
TTTAAAAAGGAAGAAAGGCCCCCAACAAAAAAAAAAAAAACTCAAGTTAA
GGGGGGGGAAAAGGGTGGAATCCCCATGGAATGGGCCAAAAAGAAATTAA
CCCAATTCACCTTTGGCCCTCAAGAACCCCAACCCCCTCCATTCCCCTAA
CGATAATGGGCCACTATTCCATTTCCACCTTTCCCTTCCAACATTCCTCC
CCCTTCTCTTCCCCTTTTCCCAATTCCCATCCCTTCCTTCCATTCTCCCT
CTTCCCATTCTTCCCCCCCTTTTTGGCTTTTATTGGCAACCCTTGCATCC
GATTCCTCCCTTTCCCCCGTTTTATTCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no064_j16.b1 MSMg01no064_j16.b1 CHROMAT_FILE:
MSMg01no064_j16.b1 PHD_FILE: MSMg01no064_j16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:09:39 2005
         (319 letters)



>mm_chr5_52498427_52499145
          Length = 719

 Score =  530 bits (274), Expect = e-155
 Identities = 295/302 (97%)
 Strand = Plus / Plus

                                                                       
Query: 16  ggaattcaataaacgttgttttaaaaaagctaattatttgttacaataaccagctactcg 75
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 216 ggaattcaataaacgttgttttaaaaaagctaattatttgttacaataaccagctactcg 275

                                                                       
Query: 76  cgccactttgtatttggaggtttgtaaactacttccatttgaaacgtaattgattccatt 135
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 cgccactttgtatttggaggtttgtaaactacttccatttgaaacgtaattgattccatt 335

                                                                       
Query: 136 tttatcatttgttcaagtttatgtggttgttctcctcctaagagatgataacatctattt 195
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 tttatcatttgttcaagtttatgtggttgttctcctcctaagagatgataacatctattt 395

                                                                       
Query: 196 tcagcaaattatacattataattcctcattcaaaagctgtaacggaaaacagaatgctaa 255
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 396 tcagcaaattatacattataattcctcattcaaaagctgtaacggaaaacaaaatgctaa 455

                                                                       
Query: 256 tttatgctgtaaacgaaactacggattctttttttctcattgttaacattagggacaaac 315
           ||||||||||||||||||||||||| || |  |  |||||||||||||||||||||||||
Sbjct: 456 tttatgctgtaaacgaaactacggaatcataatcactcattgttaacattagggacaaac 515

             
Query: 316 cg 317
           ||
Sbjct: 516 cg 517


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 719
Length adjustment: 9
Effective length of query: 310
Effective length of database: 710
Effective search space:   220100
Effective search space used:   220100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)