BAC Information

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BAC

Clone NameMSMg01-064L01
Chromosome5 (Build37)
Map Location 134,655,641 - 134,655,959
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039731, LOC666038, LOC100039750, Gats, Wbscr16
Downstream geneGtf2ird2, Ncf1, Gtf2i, LOC630424, Gtf2ird1, LOC100039820, Clip2, EG666071, Gm52, Rfc2, Lat2, Eif4h, LOC638081, Limk1, Eln, Wbscr28, Cldn13, Wbscr27, Cldn4, Cldn3, Abhd11, Stx1a, Wbscr22, Wbscr18, Vps37d, Mlxipl, Tbl2, Bcl7b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-064L01.T7 (MSMg01no064_l01.b1)MSMg01-064L01.TJ (MSMg01no064_l01.g1)
ACCAG290092AG290093
length1,189712
length of high quality
(start - end)
402 (53 - 454)590 (82 - 671)
definitionCHROMAT_FILE: MSMg01no064_l01.b1 PHD_FILE: MSMg01no064_l01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:09:50 2005CHROMAT_FILE: MSMg01no064_l01.g1 PHD_FILE: MSMg01no064_l01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:09:50 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNGGCCAGCTTGGGCGCTATAGACTCCTATAGGGAGAGGATCCGCGGAAT
TCCTACATAGCCCAAGCTAGTCTCCAACTGACAATAATCCTCCTGCATCA
ACCTCCCAGCAGTGAATTTAAATGTATGCCCCCATGCCCAATATTTTATT
GTATTTATTTACAGTGCTGAGCAAGCACTCTACCACTGGCTAAATTCCCA
GCTTGAAACAGTTTCTGCATGGTCTGTCAGGTGTGGTAGAGGCACACCCT
CAATCCAAGAACTTGGGAGGTAGGAGCAGGAAAATCAAGAGTTCGGGTCT
AACTTGGGCTACAGGAAAACCAGTATCCAATTTTTCAGAAAACAAAAAAT
AAGGGCTGGATGGATGCCTTGGTGGCTAAGAGAGGACCTGAGTTCGGTTC
TCATCAGCCATGACAAGGAACTCATGACCATCTGTCATTCCAGATCCCTG
GTATTTATTACCCCCCCCTGGCCTTCTAGGGCACACATATTCAAAAGACA
GACACAACATATACACACAGAGACACAGAAACACAAATAAAAATAAAAAC
AAATTTTTAGAGTAAATAAAAGTTAGTGTAGCTCAATGGTTAAGAGCATT
GGCTGCTCTTCCAGAGGATCTGGGGTAAAATTCCCAGCACTCACAGAGTA
GCTCATAATCACCTGTAACTAACTCCAGTTCCAGAGGGTCTGACACTGTC
TTCTGAGTGCCCTGGGCACCAAGCATGCTTGTGACACACACATTCATACA
TACCTACCTTACTGCATACATACATACCGGGAAAACACCTATATACACAA
AAATATGGGGTTTTTTTCTATTAAGTTTTTAGTTAAAAGTAAAGAAAAAG
AAAGCTGCGAGTACTTGAGTGTTAAAACTGCCTGCCTACTAAGTACAAAG
CTCTGGGTTCCTTCCCCCCCAAGCATAAACCACAAGTGGCTTCTGTCCGG
CAACCCAAATGGAGTCCAAAAAATTCAAAATTCCGGGTTTTTTCTTCCCC
TATAAATAAAACTTTTCTGAAAGGAATACCTTTCTAATAAATGAATAATC
CTTTCCTCCCAACTACTAAAAAAAATAACGCTCTCCCCTCCTTTTTTTTT
AAACTAAACGGGGTGCGGCCCCCTCTTATCACTTTATAAAAAAAACACCC
CCTCGGGGGGCCCCTTCTCCCCTCTCCCCATACTCAAAA
NACTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTGTTGTGTGCCTTGTCAC
AAAACAAGAACCAAATTGATGGGCAAGCATCGCCACCTAGTGGCCATGAT
TCACACTGTAGATGTCCTCTTGGTTGCAATTTTCGAAGGGTTTTTTTTTT
TTTTTTAACTTTTATTTATATGCATGTGTGCATATCTGTATGAGTGAATG
CCACATGTGTTCAAGGGACCCTGGAGACAAGACGTCTACGTCAGAATCCC
TGAGGCTGGAGTTGTTAGGTGGTTGTGAGTCACCTGATATGGGACCTGGG
ATCCAAATTTGATTCCTATGCAAGAGCAGCAAGCACTCTTTATTTTTGGT
TTTTCGAGACAGGGTTTCTCTGAATAGCTCTGGTTGTCATTTGTAGACGA
GGCTGGCCTCGAACTCAAAAATCCGCCTGCCTCTGCCTCCCAAGTGCTGG
GATTAAAGGCGTGTGCCACCACACCCAGCTTTTTGGCTACTTTTATCTTT
CGAACTAGGGTTTCACTATGTCAGCCAGACTGGCCTGGAACTAGGTATGT
AGACCAGACTGGCCTCAAACTCAGAGATCTGCCTTTCTCTGGCTTTGGAG
TGGTGAGAGTAAAGGTGTACACATCGGGCATGATGTACAGTTCCTCCTTC
ACCATGCCTGCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no064_l01.g1 MSMg01no064_l01.g1 CHROMAT_FILE:
MSMg01no064_l01.g1 PHD_FILE: MSMg01no064_l01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:09:50 2005
         (590 letters)



>mm_chr5_134655638_134656626
          Length = 989

 Score =  543 bits (281), Expect = e-158
 Identities = 312/323 (96%), Gaps = 4/323 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctgttgtgtgccttgtcacaaaacaagaaccaaattgatgggcaagcatcgccacctagt 60
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 ctgttgtgtcccttgtcacaaaacaagaaccaaattgatgggcaagcatcgccacctagt 263

                                                                       
Query: 61  ggccatgattcacactgtagatgtcctcttggttgcaattttcgaagggttttttttttt 120
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 262 ggccatgattcacactgtagatgtcctcttggttgcaattttcgaa-ggttttttttttt 204

                                                                       
Query: 121 tttttaacttttatttatatgcatgtgtgcatatctgtatgagtgaatgccacatgtgtt 180
           |||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 tttaaaacttttatttatatgcatgtgtgcatatctgtatgagtgaatgccacatgtgtt 144

                                                                       
Query: 181 caagggaccctggagacaagacgtctacgtcagaatccctgaggctggagttgttaggtg 240
           ||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct: 143 caagggaccctggagacaagacgtctatgtcagaatccctgaagctggagttgttaggtg 84

                                                                       
Query: 241 gttgtgagtcacctgatatgggacctgggatccaaatttgattcctatgcaagagcagca 300
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct: 83  gttgtgagtcacctgatatgggacctgggatccaaatttgagtcctatgcaagtgcagca 24

                                  
Query: 301 agcactctttatttttggttttt 323
           |||||||||| |||||  |||||
Sbjct: 23  agcactcttt-ttttt--ttttt 4


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 590
Length of database: 989
Length adjustment: 10
Effective length of query: 580
Effective length of database: 979
Effective search space:   567820
Effective search space used:   567820
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)