BAC Information

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BAC

Clone NameMSMg01-064L02
Chromosome5 (Build37)
Map Location 105,434,784 - 105,435,091
singlet/doubletsinglet
Overlap genenone
Upstream geneHsd17b11, Nudt9, Sparcl1, LOC100041136, Dspp, Dmp1, LOC100041145, Ibsp, Mepe, Spp1, Pkd2, BC005561, LOC100042165, LOC100041172, D930016D06Rik, 2310012P17Rik, LOC640963, LOC100041199, LOC666726, C230055K05Rik, LOC100041216, Abcg3, LOC626471, EG545790
Downstream gene5830443L24Rik, BC057170, Gbp4, LOC675363, LOC626578, Mpa2l, EG634650, Lrrc8b, Lrrc8c, Lrrc8d, LOC100042335, D830014E11Rik, LOC100042349, Zfp326, LOC626723
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-064L02.T7 (MSMg01no064_l02.b1)MSMg01-064L02.TJ (MSMg01no064_l02.g1)
ACCAG290094AG290095
length707741
length of high quality
(start - end)
315 (46 - 360)---
definitionCHROMAT_FILE: MSMg01no064_l02.b1 PHD_FILE: MSMg01no064_l02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:09:50 2005CHROMAT_FILE: MSMg01no064_l02.g1 PHD_FILE: MSMg01no064_l02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:09:50 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
CAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAGCCCCTAAGGTTTCAGTGTCTGGAGGTCGTGAGGGAGAAGACTG
AGCATGACTATTGAAGGTGCTCAAGAGAGGAGTGAAGGTAAAGAGCAGGG
ACTAAGCCAGGTATGGTGGCGCACGCCTTTAATCCCAGCACTCGGGAGGC
AGAGGCAGAAGGATGTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGTGAG
TTCCCGGACAGCTGGGGCTATACACAGAAACCTTGTCTCAAAAAAACAGA
AAAAAAAAAAAAAAGAGCTGGGACCATGGGGAAGGAGTGAGGGTGAGGCA
GGGAGCACTGATTATATGAGGCGACTATAAGGAGGTGTCTGATGGCGTTG
GCATACTCAGCACTTGAAAATTCTGAGGAAACAAGGCACCTTAGCCTTTT
TTCAGTGTTGGGAACCAAACTCAGGGACCTGAATGATGGCCTATTACACA
ACCAAAGATCATGTATGTGCATGTGTGTACATGTATATGCACGTGGATGT
GTGGGTGTGCATGTCAGTGCACTGTACTGTGTGTGCATGTATGTGCTTGT
GTGTGTGTGTATGCATGTGTGTGCATGCATGTGTGTGCATGCATGTATGT
GCATGCATGTATGTGCACTTGTGTGCGTGCATGTTCATGCTTGTATGCCT
GTCTACA
ATCAATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCTCCCCCTCTTCCGGTGGGAAGAAC
ATCTGCAACAGCTGGTGACAATCCTCCCAAGTAGGCTGATGAAAGAACAT
AAGGAACTCTACCAACCCTGGGAGGGATTGGGGATCCTGAAAAAGGGGGT
GGTTAGTTTTCCAGTTATAAAGATCAGCAGAAGAAAATGACCCGTACTGA
AGGGCTTGAAGTTTGGGCGGGTCCAGAATCCACCCGGAATCTGGGGTCCG
CGGCTCCATGGACCCACAGGAGTCTGCCTCTTGACGCCCCGAGGGGTTTG
GGGCTCCCCCCGCGGTTTTTTGTTTACCCCCCCCCCCACGGGAAGGTTGG
GGAATAAGGCACCTAGGAGGGTTTAAAAAATTAAAAAAAACCCAAGGGTT
TAGCTGGGGGCTCCCAATCCGGAAAAGCCTTCCATTTTTCTTGGAACACT
AGAGTACCGCCACCATTTTGAGAAGCAAAACTCCATTTTAACAGTGGAAA
CAATCTATTTTCCTTAAAAAAGAACTCCCAAAGTATTACTTCGGCAAAAG
TTTGGCTGGCTCGCCCCTGCGCCCCAACCCCACAAAGTGCCATGCCGCCC
ACCTATCTGCCCAATAATCCGCCCCTCTTAGCACCCGAATCTATCCTATC
ACATCCCCTCCCCTTCCCGGCCGATCCCTCTATAAACCTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no064_l02.b1 MSMg01no064_l02.b1 CHROMAT_FILE:
MSMg01no064_l02.b1 PHD_FILE: MSMg01no064_l02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:09:50 2005
         (315 letters)



>mm_chr5_105434783_105435497
          Length = 715

 Score =  578 bits (299), Expect = e-169
 Identities = 307/311 (98%), Gaps = 3/311 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcagcccctaaggtttcagtgtctggaggtcgtgagggagaagactgagcatgact 64
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 309 gaattcagcccctaaggtttcagtgtctggaggtcatgagggagaagactgagcatgact 250

                                                                       
Query: 65  attgaaggtgctcaagagaggagtgaaggtaaagagcagggactaagccaggtatggtgg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 attgaaggtgctcaagagaggagtgaaggtaaagagcagggactaagccaggtatggtgg 190

                                                                       
Query: 125 cgcacgcctttaatcccagcactcgggaggcagaggcagaaggatgtctgagttcgaggc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 cgcacgcctttaatcccagcactcgggaggcagaggcagaaggatgtctgagttcgaggc 130

                                                                       
Query: 185 cagcctggtctacaaagtgagttcccggacagctggggctatacacagaaaccttgtctc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 cagcctggtctacaaagtgagttcccggacagctggggctatacacagaaaccttgtctc 70

                                                                       
Query: 245 aaaaaaacagaaaaaaaaaaaaaaagagctgggaccatggggaaggagtgagggtgaggc 304
           ||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69  aaaaaaacag---aaaaaaaaaaaagagctgggaccatggggaaggagtgagggtgaggc 13

                      
Query: 305 agggagcactg 315
           |||||||||||
Sbjct: 12  agggagcactg 2


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 715
Length adjustment: 9
Effective length of query: 306
Effective length of database: 706
Effective search space:   216036
Effective search space used:   216036
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)