BAC Information

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BAC

Clone NameMSMg01-064P10
Chromosome5 (Build37)
Map Location 141,053,545 - 141,053,855
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041217, Micall2, Ints1, Mafk, BC019731, 1810042K04Rik, A930017N06Rik, LOC100041270, Mad1l1, Ftsj2, Nudt1, Snx8, Eif3s9, LOC100041291, EG231836, Chst12, Grifin
Downstream geneLfng, Ttyh3, Iqce, AA881470, 6530401C20Rik, Gna12, Card11, LOC623466
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-064P10.T7 (MSMg01no064_p10.b1)MSMg01-064P10.TJ (MSMg01no064_p10.g1)
ACCAG290286AG290287
length726865
length of high quality
(start - end)
315 (46 - 360)---
definitionCHROMAT_FILE: MSMg01no064_p10.b1 PHD_FILE: MSMg01no064_p10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:10:19 2005CHROMAT_FILE: MSMg01no064_p10.g1 PHD_FILE: MSMg01no064_p10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:10:19 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCACTCTGTAGATAGACCAGGTTGGCCTCGAACTCAGAAATCCACCT
GCCTCTGCCTCCCAAGTGCTGGGATTAAAGATGTGTGCTACCACTGCTCG
GCTTTTTTGTAGGCCTTTTTTTCCCATCAAATTATCTTTGGTCCAGAGCC
AGGGAAATAGATATCCTTCACAAGATGCCCTGTGGCACCCTACCGAGGAT
CTTCAAGGGTCCTTTCCTAGATCCTATCTTAGATTCCAAGGCTGGCACAT
GCCCTGAGCTCACAATAGGAACAGGGAATCATACTTACTCCTAAAGCAGG
CAAGTGTTGTATTGCTGACGCCCCACGGACAATACTGACAGTCTTATAGA
GGCTGATGTCAGGCACAGGGGAAGATCATCGTGCCTCAGTTTCCCCTCTA
AGAACTTCTCTGAACAGGATGGAGGCTACAGAGAAAATTATTGGTTCCCT
GGGTATGTGTCTATAGTCAAGAAAGGAGGCATGAGGAGAGGGCTGAATAA
AGAGATGAGGAGCTTCAGTCTACCCTGTCTCCTCCCACATCCCCCATAAC
TCTGAATCTTTCCATTCAGCACCCTGTCTACATGATTGAACAGAGAGAGA
CAGGCAATGAATGGACAGAAGAATGGATGGATGGATGGATAGATGGATGG
ATGGATGCCCGCTTCCCCCTATACCC
CGATGATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXATTTTGAAGGTTGGTTGGTTGGTTGGT
TGGTTGGTTGGTTGAAAACAGGAATTTTCTGGGAACTTCGGGTTGTCTGG
AAATTCCTTCGGAAAACAAGCTGGGCTCAAACTTCAAAAATTGGCCGGCC
TCGGCTTCCAAAGCGTTGAATTTAAGGGGGGGAACCACCATTGCCAGGAA
AAGGATAATAATTTTGGTTGGTTGGCTAATTAATTAATTAATTAATTAAC
TAATTAATCAATTAACTCCTTTTCCTCCCCTACCTCATTCCTCCCCTAAA
AAACCTAACTTTAAATAACTATCCCCTCCCCCCCCCCCCTTCCCTTTTTT
ATTTAATATAAAAATTTTAACTCCCCCCCCCCCCCAAAAAAAAAAAAAAA
AATCTTTCCTGCTGGGCCTCTTTCACATATTCATACTACTTTCTATCCAC
TCTTTTCTCACCTCTTCTTTCTCTCCCCCTCCCTCCTTTCCTTACTTACC
ATTACCTATCCTTAACCTTATCACCCATCTTTGCATTTTTTATTCCTCCC
ACACCTTTCCTTTATTCTACTCTTCTCTTTTCCCTAACACTACACCTACT
ACTACTCCCCTCATACCTATTTCCCACTTTACTCTCCTTATTCCCTTCCC
ACCTTCACCTTTTCCCCTTTTTCCCCCTTTTTCCCCATACCTCCTTCCCC
TCCCCTTCCGCTCCCTTTTTTTCCCCTTACTTTCCCCCCCACTTTTTCTC
CCCGTCATTCTTTCCCCTCCCTCTTCCCCTCCCATCCCCTCCCCATATCC
TCCATTATTTTTTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no064_p10.b1 MSMg01no064_p10.b1 CHROMAT_FILE:
MSMg01no064_p10.b1 PHD_FILE: MSMg01no064_p10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:10:19 2005
         (315 letters)



>mm_chr5_141053224_141053938
          Length = 715

 Score =  557 bits (288), Expect = e-163
 Identities = 306/312 (98%), Gaps = 1/312 (0%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcactctgtagatagaccaggttggcctcgaactcagaaatccacctgcctctgc 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 632 ggaattcactctgtagatagaccaggttggcctcgaactcagaaatccacctgcctctgc 573

                                                                       
Query: 64  ctcccaagtgctgggattaaagatgtgtgctaccactgctcggcttttttgtaggccttt 123
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||
Sbjct: 572 ctcccaagtgctgggattaaagatgtgtgctaccactgctcagcttttttgtaggcc-tt 514

                                                                       
Query: 124 ttttcccatcaaattatctttggtccagagccagggaaatagatatccttcacaagatgc 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 ttttcccatcaaattatctttggtccagagccagggaaatagatatccttcacaagatgc 454

                                                                       
Query: 184 cctgtggcaccctaccgaggatcttcaagggtcctttcctagatcctatcttagattcca 243
           |||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 453 cctgtggcaccctaccaaggatcttcaagggtcctttcctagatcctatcttcgattcca 394

                                                                       
Query: 244 aggctggcacatgccctgagctcacaataggaacagggaatcatacttactcctaaagca 303
           ||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||
Sbjct: 393 aggctggcacatgccctgagctcacaataggaacagggaatcatacccactcctaaagca 334

                       
Query: 304 ggcaagtgttgt 315
           ||||||||||||
Sbjct: 333 ggcaagtgttgt 322


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 715
Length adjustment: 9
Effective length of query: 306
Effective length of database: 706
Effective search space:   216036
Effective search space used:   216036
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)