Query= MSMg01no065_d16.b1 MSMg01no065_d16.b1 CHROMAT_FILE:
MSMg01no065_d16.b1 PHD_FILE: MSMg01no065_d16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:10:40 2005
(493 letters)
>mm_chr5_92801405_92802298
Length = 894
Score = 826 bits (427), Expect = 0.0
Identities = 469/483 (97%), Gaps = 1/483 (0%)
Strand = Plus / Plus
Query: 5 gaattccttccttctccgttgcaataggaaggaagggagacctcaaaggcctggccataa 64
||||||||||||| || |||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 205 gaattccttccttttctgttgcaataggaaggaagggagacctcaaaggcctgaccataa 264
Query: 65 ctcaaatgccgaggcctccctgacaaaggaagattagagcaggaggctgagtgtattttc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 265 ctcaaatgccgaggcctccctgacaaaggaagattagagcaggaggctgagtgtattctc 324
Query: 125 attggtcatgtttaccttctgtgtccccaccttgaccagcagtagcaactctcagatcag 184
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 atcggtcatgtttaccttctgtgtccccaccttgaccagcagtagcaactctcagatcag 384
Query: 185 ccagtgcacgtcccacagacaagggaaaaggtgacagacctggtgttgacacttggctaa 244
|||||||| ||||||||||||| ||||||||||||||||||||| ||||||||||||| |
Sbjct: 385 ccagtgcatgtcccacagacaaaggaaaaggtgacagacctggttttgacacttggctga 444
Query: 245 gatggacaggagctgatgtcagtcagccatagctgatgtctaatgcagcaggaatccgca 304
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct: 445 gatggacaggagctgatgtcagtcagccagagctgatgtctaatgcagcaggaatctgca 504
Query: 305 -cagatggaggccaggcaatcttccatagccagtggagaagaagcagactaggaaacaaa 363
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 505 tcagatggaggccaggcaatcttccatagccagtggagaagaagcagacaaggaaacaaa 564
Query: 364 accaaacttaaccaggtctgaaggtaccaacccctagggggtagaggcaggggaatctct 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 accaaacttaaccaggtctgaaggtaccaacccctagggggtagaggcaggggaatctct 624
Query: 424 ctgcgctaaaggccagccaggtggtatacacagtgagaccccgtctcaaacaaacaaaca 483
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ctgagctaaaggccagccaggtggtatacacagtgagaccccgtctcaaacaaacaaaca 684
Query: 484 aac 486
|||
Sbjct: 685 aac 687
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 493
Length of database: 894
Length adjustment: 10
Effective length of query: 483
Effective length of database: 884
Effective search space: 426972
Effective search space used: 426972
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no065_d16.g1 MSMg01no065_d16.g1 CHROMAT_FILE:
MSMg01no065_d16.g1 PHD_FILE: MSMg01no065_d16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:10:40 2005
(502 letters)
>mm_chr5_92981493_92982393
Length = 901
Score = 799 bits (413), Expect = 0.0
Identities = 453/469 (96%), Gaps = 6/469 (1%)
Strand = Plus / Minus
Query: 39 cttaaggagaaccaggacagacagacataagtaaaagtaagcctgggtcacacacacttg 98
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 901 cttaaggagaaccaggacagacagacataagtaaaagtaagcctgggtcacacacacttg 842
Query: 99 tactgttgttctttaaaccatctcagccttcactgaagaaggctcttggatcttcatata 158
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 841 tactgttgttctttaaaccatctcagccttcactgaagaaggctcttggctcttcatata 782
Query: 159 ctgccttcatgatataagcatggtaagaagaagtcccaaacacagtcaaagcaaagcaaa 218
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 781 ttgccttcatgatataagcatggtaggaagaagtcccaaacacagtcaaagcaaagcaaa 722
Query: 219 gcaaag-----caaaacaaaaccaacaactatcaaaaccttttctatggctacaggccct 273
|||||| |||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct: 721 gcaaagcaaaacaaaacaaaaccaacaacaaccaaaaccttttctatggctacaggccct 662
Query: 274 gtcttaaaataaaaccaagtaaataaatacatttcttttaacaattataagatcatttta 333
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 gtcttaaaataaaaccaagtaaataaatacatttcttttaacaattataagatcatttta 602
Query: 334 acctgaataaataatgacacaggtttctgttggttcagggtaagcaaattcaatctctcc 393
||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 601 acctgaatagataatgacacaggtttctgttggttcagggtaag-taattcaatctctcc 543
Query: 394 aaactacttccgtttcagccatggttgtccaagtcttgttttggagccttgctgaggcaa 453
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 aaactacttcagtttcagccatggttgtccaagtcttgttttggagccttgctgaggcac 483
Query: 454 aaaggcatggcaagcaagctgctcacctcctggcagcgagggtgcagac 502
||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 482 aaaggcatggcaagcaagctgctcacctcctggcagcaagggtgcagac 434
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 502
Length of database: 901
Length adjustment: 10
Effective length of query: 492
Effective length of database: 891
Effective search space: 438372
Effective search space used: 438372
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
