Query= MSMg01no065_f19.b1 MSMg01no065_f19.b1 CHROMAT_FILE:
MSMg01no065_f19.b1 PHD_FILE: MSMg01no065_f19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:10:50 2005
(653 letters)
>mm_chr5_42633457_42634508
Length = 1052
Score = 1139 bits (589), Expect = 0.0
Identities = 634/649 (97%), Gaps = 3/649 (0%)
Strand = Plus / Minus
Query: 5 gaattctctgtttgt-caagggcattcttctgtgtcagcttttttctgcacccagaagct 63
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 851 gaattctctgtttgtccaagggcattcttctgtgtcagcttttttctgcacccagaagct 792
Query: 64 gtaagaataaagagggaaagaatgattaaatagtctcggctcccttagacacctaaaaca 123
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 791 gtaagaataaagagggagagaatgattaaatagtctcggctcccttagacacctaaaaca 732
Query: 124 ttctaataactctgttcacggtcatcagtgtttaattattgctggaatggactatagcat 183
|||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||
Sbjct: 731 ttctaataactctgttcatggtcatcagtgtttaattattgctggaaaggactatagcat 672
Query: 184 gtagaaagcagtctccagaagccccatggcaaggcccaatacaaactgcacctccttgct 243
|||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||
Sbjct: 671 gtagaaagcagtctccagaaaccccattgcaaggcccaatacaaactgcacctccttgct 612
Query: 244 ctcctaaaaaaaaagtctagctgacaagaagctaagcttctgttttccacactataaaac 303
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 atcct-aaaaaaaagtctagctgacaagaagctaagcttctgttttccacactataaaac 553
Query: 304 caaagtaaagttatctgctttgcagaagtaacataaagatcagaatcaatatccatgtgc 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 caaagtaaagttatctgctttgcagaagtaacataaagatcagaatcaatatccatgtgc 493
Query: 364 tgtagagaaaccaaaacttaagtgataaaataactaggttaactcaataataatcacagg 423
|||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 492 tgtagagaaaccgaaacttaaatgataaaataactaggttaactcaataataatcacagg 433
Query: 424 tgctgtgtcctttgcccctaacataccaggccattctgtttctcatctcatactaagcaa 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 tgctgtgtcctttgcccctaacataccaggccattctgtttctcatctcatactaagcaa 373
Query: 484 ctctcatatactccttaatagtaccttttaaatcttcaaactcatggttaaaatttcatt 543
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 ctctcatgtactccttaatagtaccttttaaatcttcaaactcatggttaaaatttcatt 313
Query: 544 tacaatttttttggaagttgctattaatatgctgacactggagttgatgtaacttagaac 603
||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 312 tacaa-ttttttggaagttgctattaatatgctgacactggagtcgatgtaacttagaac 254
Query: 604 cttatccaggaaagttaatctttttattttctttataaagaaacttctg 652
|| |||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 253 ctcatccaggaaagttaatctttttgttttctttataaagaaacttctg 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 653
Length of database: 1052
Length adjustment: 10
Effective length of query: 643
Effective length of database: 1042
Effective search space: 670006
Effective search space used: 670006
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no065_f19.g1 MSMg01no065_f19.g1 CHROMAT_FILE:
MSMg01no065_f19.g1 PHD_FILE: MSMg01no065_f19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:10:50 2005
(623 letters)
>mm_chr5_42608415_42609437
Length = 1023
Score = 1183 bits (612), Expect = 0.0
Identities = 621/624 (99%), Gaps = 1/624 (0%)
Strand = Plus / Plus
Query: 1 tttgaggaagggatcttctgaagaa-tttcattctgcttgctctgtaggaagcttagact 59
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 200 tttgaggaagggatcttctgaagaagtttcattctgcttgctctgtaggaagcttagact 259
Query: 60 cagattgtagtaatgaggtctaaggagatgttcagtgggtaaagaccttgctgtacaatc 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 cagattgtagtaatgaggtctaaggagatgttcagtgggtaaagaccttgctgtacaatc 319
Query: 120 catgaggacctgagtttagatgcccagaactcatgtaatgtatggtggcatacatctatg 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 catgaggacctgagtttagatgcccagaactcatgtaatgtatggtggcatacatctatg 379
Query: 180 accccagtgattgggggaaaaggcagaagagtcctgtgggagctttttgtcagccagttt 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 accccagtgattgggggaaaaggcagaagagtcctgtgggagctttttgtcagccagttt 439
Query: 240 atccaactgatgagcttgagatgccaggggaaatgtgttccaaaaactatggaagaaaag 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 atccaactgatgagcttgagatgccaggggaaatgtgttccaaaaactatggaagaaaag 499
Query: 300 catccaatggtggcctctacatgtgcatatacaggaacaatacccatgtacacacacata 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 catccaatggtggcctctacatgtgcatatacaggaacaatacccatgtacacacacata 559
Query: 360 gagacatgtgcatagaaagacttcatgatgaaattcagtacattttcaaatacttcttta 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 gagacatgtgcatagaaagacttcatgatgaaattcagtacattttcaaatacttcttta 619
Query: 420 gacagactagatttcttgtcacctccaaaggtatttgtttacaattgatcaatactacca 479
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 gacagactagatttcttggcacctccaaaggtatttgtttacaattgatcaatactacca 679
Query: 480 ccttcttcaaactttcttcatactctttcttcttctaggtcttttgggtgcaggtacaag 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 ccttcttcaaactttcttcatactctttcttcttctaggtcttttgggtgcaggtacaag 739
Query: 540 caggtctggtggtgtaggctgtatctcccagaagctcaaaggtctgtgtctgaatgttgc 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 caggtctggtggtgtaggctgtatctcccagaagctcaaaggtctgtgtctgaatgttgc 799
Query: 600 aaatttcaaggcctgcttgggcta 623
|| |||||||||||||||||||||
Sbjct: 800 aagtttcaaggcctgcttgggcta 823
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 623
Length of database: 1023
Length adjustment: 10
Effective length of query: 613
Effective length of database: 1013
Effective search space: 620969
Effective search space used: 620969
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
