BAC Information

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BAC

Clone NameMSMg01-065G15
Chromosome5 (Build37)
Map Location 50,354,124 - 50,354,510
singlet/doubletsinglet
Overlap geneGpr125
Upstream geneLOC100041668, LOC100041659, EG433885, LOC666223
Downstream geneEG637307, LOC100041015, LOC242987, EG624734
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-065G15.T7 (MSMg01no065_g15.b1)MSMg01-065G15.TJ (MSMg01no065_g15.g1)
ACCAG290630AG290631
length681679
length of high quality
(start - end)
492 (42 - 533)387 (72 - 458)
definitionCHROMAT_FILE: MSMg01no065_g15.b1 PHD_FILE: MSMg01no065_g15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:10:54 2005CHROMAT_FILE: MSMg01no065_g15.g1 PHD_FILE: MSMg01no065_g15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:10:55 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAAAGAGGATCCGCGGA
ATTCTTTGTTCACCTCTGAGCCCCATTTTTAATGGGTTTATTTGATTTTC
TGGAGTTCACCTTCTTGAGTTTTTTATATATATTGGATATTAGTCCCTTA
TCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTTTT
TGTCTTGTAGACGGTTTCTTTTGCCTTGCAGAAGCTTTGCAACTTTATGA
GGTCCCATTTATGGATTCTCGATCTTACTGCACAAGCCATTGCTGTTCTA
TTCAGGAACTTTTCCCCTGTGCCCATATCTTCGAGGCTTTTCCCTACTTT
CTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTAGAGTTCCTTAATCC
ACTTAGATTTGACCCCACTACAAGGAGATAGGAATGGATCAATTCGCATT
CTACTATATAATAACCGCCAGCTGTGTCAGTACCATTTGTTGAAAATGCT
GTCTTTTTTCCACTGGATGGTTTTAGCTCCCTTGCCAAAGATCAAGGGAC
CATAGGTGTGTGGGTTCATCTCTGGGTCTTCAATTCTGTTCCATTGGTCT
ACTTTGTCTGTCACTATACTCGTACCTTGCCAGTTTTTTTCACAATTGCT
CTGTAGTAATGCTTTATGTCAGGCATGTTGG
AATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTCAGTTGTGAGTAGGTTCACTGGAGTCCT
GATGTGCACCCAGCTGAGCACACCCCGCCTCAGAGTTTGCAGAACTGGCT
GTGGATACGTATTGTTCAGACCTCCAGAAAGTGCGGAATTGCACGTACAA
AGAAGGGCCACTTGTGAGAGGAGGGCACTTGCTGAAGCTGCTGCCATGAA
CCTGCTTTGGGGTTAGGGAATGGTAGAGGTGTCCTCTGCATAAAGGAGCT
AGCTGAGAAGCGCAGGTTGCTTCCATTCAAGTCCATCTTGGGGAACTTGT
ACATTTGCTAGATTGACTGGCAGGACCGTGGGTGACTCGGACAAGGGTCA
CAGCTAGTTCCACTTATTGCCTATAGTACCTCAGGGAAGGGCCTCTATAG
TTGTCTAAGTTTTGTAAGCTCCATGAGTTTGTAAATTTCTTGAGAGTTTA
TGCATTTCATACCCAGCTCTTCCAGAGCTGCACAACAGATAGCCACGTTT
AAGTGTGAATAGCTGCCGGACAGAGAGCTTTAACTCATGAAGCGCCCGCT
GACAGGTTCCTGCTAAGAACGTGTGCTTTTTTTGTGTTATTGCATTCCCC
CATGCCTGTTCTGTTTCTTTTGTTCTTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no065_g15.g1 MSMg01no065_g15.g1 CHROMAT_FILE:
MSMg01no065_g15.g1 PHD_FILE: MSMg01no065_g15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:10:55 2005
         (387 letters)



>mm_chr5_50353924_50354710
          Length = 787

 Score =  717 bits (371), Expect = 0.0
 Identities = 383/387 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcagttgtgagtaggttcactggagtcctgatgtgcacccagctgagcacaccccgcctc 60
           ||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||
Sbjct: 587 tcagttgtgagtaggttcactggaggcctgatgtgcacccagctgagcgcaccccgcctc 528

                                                                       
Query: 61  agagtttgcagaactggctgtggatacgtattgttcagacctccagaaagtgcggaattg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 527 agagtttgcagaactggctgtggatacgtattgttcagacctccagaaagtgcggaattg 468

                                                                       
Query: 121 cacgtacaaagaagggccacttgtgagaggagggcacttgctgaagctgctgccatgaac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 cacgtacaaagaagggccacttgtgagaggagggcacttgctgaagctgctgccatgaac 408

                                                                       
Query: 181 ctgctttggggttagggaatggtagaggtgtcctctgcataaaggagctagctgagaagc 240
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 407 ctgctttggggttagggaatggtagaggtgtcccctgcataaaggagctagctgagaagc 348

                                                                       
Query: 241 gcaggttgcttccattcaagtccatcttggggaacttgtacatttgctagattgactggc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 gcaggttgcttccattcaagtccatcttggggaacttgtacatttgctagattgactggc 288

                                                                       
Query: 301 aggaccgtgggtgactcggacaagggtcacagctagttccacttattgcctatagtacct 360
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 287 aggaccgtgggtgactcggacaagggtcacagctagttctacttattgcctatagtacct 228

                                      
Query: 361 cagggaagggcctctatagttgtctaa 387
           |||||||||||||||||||||||||||
Sbjct: 227 cagggaagggcctctatagttgtctaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 387
Length of database: 787
Length adjustment: 9
Effective length of query: 378
Effective length of database: 778
Effective search space:   294084
Effective search space used:   294084
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)