BAC Information

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BAC

Clone NameMSMg01-065I08
Chromosome5 (Build37)
Map Location 138,807,695 - 138,808,073
singlet/doubletsinglet
Overlap genenone
Upstream geneEphb4, Zan, EG665591, Epo, Pop7, EG666372, Perq1, Gnb2, Actl6b, Trfr2, Mospd3, EG640050, Pcolce, Fbxo24, Lrch4, Sap25, Irs3, Hrbl, LOC624083, 6430598A04Rik, Tsc22d4, 2010007H12Rik, Bcdin3, Zcwpw1, Pilra, Pilrb1, Pilrb2, LOC100041016, LOC100041027, Cyp3a13, LOC666429, Gje1, Azgp1, EG243302, LOC100041050, Smok3a, Smok3b, Smok3c, Zkscan1, Zscan21, Zfp113, Cops6, Mcm7, Ap4m1, Taf6, 2610019P18Rik, BC038925, Gm454, BC055004, 0910001L09Rik, BC037034, Gal3st4, Gpc2, Stag3, Got2-ps1
Downstream gene2610020C11Rik, LOC433955, EG666533, 1700123K08Rik, Zfp68, LOC665882, A430033K04Rik, BC004044, EG384244, Pdgfa, Prkar1b, Heatr2, Unc84a, 1110007L15Rik, Centa1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-065I08.T7 (MSMg01no065_i08.b1)MSMg01-065I08.TJ (MSMg01no065_i08.g1)
ACCAG290711AG290712
length689691
length of high quality
(start - end)
384 (71 - 454)446 (74 - 519)
definitionCHROMAT_FILE: MSMg01no065_i08.b1 PHD_FILE: MSMg01no065_i08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:11:03 2005CHROMAT_FILE: MSMg01no065_i08.g1 PHD_FILE: MSMg01no065_i08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:11:03 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AAAATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAAATCCGCG
GATTCTTTGAACTACTTAAGTCATTTTCTTTTTTAATTTTTAACTTGAGT
TTTGCTTGTTTCTCTTATTTGGGGTTATTATGAGCTTAATAATTATTGAA
GGGGAATTGATTTGGATTTTCATGGTTTCTTGTGTTTTAGAAATGGGACT
TGCCCATCTGTGTTTACATCAGTGGTGAAGTTTTGTTGCTGCTTTAATTC
AGTAAAGTTTTCCTTCCTTCATTGGGAACATTTCCAGTGTTAAAGAAAGA
CAAGGTGTTAGTGGTCTTGAGGTGGTAATTTCCATTGTCAGGCTTGTATG
CAGGTCTCTGAGCTCTCCCCTCAGCCATCCTCAGAGATGTGACCAGTATT
TTCAACACCAGTTAATATCCATCTGTAAGATCTCTATTACCATATAGTAT
TTGCTGACTATAAATCAGTCATTAGAAATTCTTTATGTATCAATTGTTTA
AGAGAGTAGGACATACTTTCTCTGTACTTATATGTAAGAGTTTTTTGGCT
TGTTTTAGAGAGTAGGACATACTTAATTCTCTCTGTACTTATATGTAAGA
TTTTTTGCCTATTTTTAAGTAAGCAAAAAGGAGCAGAGGAATCAGATGCA
AATCACTGAGGGACTACCGATTAATACCACATTACTCAC
NCGATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAATACCCCACTCTCATCAATGGACAGA
TGATAGAAACAGAAACTAAACAGAGACCCAGTGAAACTAACAGAAGTTAT
GAACAAAATATATTTAACAGATATCTATAGAATATTTAATCCTAAAACAA
AAGAATATACCTTCTTCTCAGTACCTCATGGCATCTTCTATAAAACTGAC
CATATAATTGGTCACAAAAGAGGCCTCAGCAGATGCAAGAAGACTGAAAT
AATCCCATGCATCCTATCAGATCACCAAGAACTAAGGCTAGACTTCAATA
GCAAAAAAAAAAAAAACAAACAAACAAAAAAAAAAAACAAAAAACCAAAA
CAAAAAACCAAACAACAACAAACAAACAAACAAAAAACCAGAAAGCCCAC
TTACATATGGAAGCCCACGTACACTTACTCACCAGGCAGTAGTGGCTCAT
CCTTCAATCCCAGCACTTGGGAGGCAGAGGCAGGGGGAATTCTGAGTTCT
AGGCCAGCCTGTTCTACAGAGTGAGTTCCAGGACAGCCAGGGCTACACAG
AGAAACCCTGCTTGGAAAACCCAAAATTGATTGATTGAATGAATGAATGG
ATGAATGAATGACTAAATAAATAATTAATTTACTAGCCTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no065_i08.b1 MSMg01no065_i08.b1 CHROMAT_FILE:
MSMg01no065_i08.b1 PHD_FILE: MSMg01no065_i08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:11:03 2005
         (384 letters)



>mm_chr5_138807495_138808278
          Length = 784

 Score =  725 bits (375), Expect = 0.0
 Identities = 378/379 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcattttcttttttaatttttaacttgagttttgcttgtttctcttatttggggttatta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcattttcttttttaatttttaacttgagttttgcttgtttctcttatttggggttatta 260

                                                                       
Query: 61  tgagcttaataattattgaaggggaattgatttggattttcatggtttcttgtgttttag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgagcttaataattattgaaggggaattgatttggattttcatggtttcttgtgttttag 320

                                                                       
Query: 121 aaatgggacttgcccatctgtgtttacatcagtggtgaagttttgttgctgctttaattc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaatgggacttgcccatctgtgtttacatcagtggtgaagttttgttgctgctttaattc 380

                                                                       
Query: 181 agtaaagttttccttccttcattgggaacatttccagtgttaaagaaagacaaggtgtta 240
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 381 agtaaagttttccttccttcattgggaacattcccagtgttaaagaaagacaaggtgtta 440

                                                                       
Query: 241 gtggtcttgaggtggtaatttccattgtcaggcttgtatgcaggtctctgagctctcccc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtggtcttgaggtggtaatttccattgtcaggcttgtatgcaggtctctgagctctcccc 500

                                                                       
Query: 301 tcagccatcctcagagatgtgaccagtattttcaacaccagttaatatccatctgtaaga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tcagccatcctcagagatgtgaccagtattttcaacaccagttaatatccatctgtaaga 560

                              
Query: 361 tctctattaccatatagta 379
           |||||||||||||||||||
Sbjct: 561 tctctattaccatatagta 579


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 384
Length of database: 784
Length adjustment: 9
Effective length of query: 375
Effective length of database: 775
Effective search space:   290625
Effective search space used:   290625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)