BAC Information

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BAC

Clone NameMSMg01-065J04
Chromosome5 (Build37)
Map Location 85,722,847 - 85,723,359
singlet/doubletsinglet
Overlap genenone
Upstream geneEpha5
Downstream geneCenpc1, LOC100039521, AI586015, Ube1l2, Gnrhr, Tmprss11c
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-065J04.T7 (MSMg01no065_j04.b1)MSMg01-065J04.TJ (MSMg01no065_j04.g1)
ACCAG290750AG290751
length688690
length of high quality
(start - end)
520 (67 - 586)515 (72 - 586)
definitionCHROMAT_FILE: MSMg01no065_j04.b1 PHD_FILE: MSMg01no065_j04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:11:07 2005CHROMAT_FILE: MSMg01no065_j04.g1 PHD_FILE: MSMg01no065_j04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:11:07 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCATGTGCTTACACCCCTGAATAGATGCCACATAAACATAAGGTCCAA
AATAAAATAATTTTTAAAAGATTTTTTATAAGATTTACTTTTCCTGAGTT
TTGTAGAAAAAATTATGTGTATAAACTGGGAGTTACTGAGTGAGGTAACC
CAATCACAAAAGAACTCACATGATATGCACTCACTGATAAGTGGATTTTA
GCCCATAAACTTAGAATATCCAAGATACAACTTGCAAAACACATGAAACT
CAAGAAGAAGGAAGAGTATAGTGTGGACACTTTGCCCCTTAGAAATGGGA
ACAAAACACCCAAGGAAGGAGTTACAGAGACAAAGTTTGGAGCTGAGACG
AAAGGATTGACCATCCAGACACTGCCCCACCCGGGGGTCCATCCCATAAT
CAGCCACCAAACAAAGACACTATTGCATATGCCAGCAAGATTTTGCTGAA
GGGACCCTGATATAGCTGTCTCTTATGAGGCTAAGCCAGTACCTGGCAAA
CACAAAAGTGGATGATTGCAGTCAGCTATTGGATGGAACCAGAGTCCCCC
AAAGGAGGAGCTAGAGAAAGTACACAAGGAGCTGAAAGGGTCTGCAACTC
TATAGGTGGAACAACAATATGAACTAACCAGTACCCCC
AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTTGTATCTCTTGAAAATAATCTGTAAATT
CAATCTCCATTTTTGGAAGTAAATGCAACTGGAATCATTATATAAGGAGC
CTGTACTGAGAAACCTTGAGTTTCTGTAACCATAAAGACCCATATAGAGG
TAGAACCATTGAAAACACACAGGTTCTCGTCAGATTTTTCCTAGATATTT
GATTTCAAACTTCCAAAAATGGTGAGCATGGAAAGTCTATAGCTTTTAAA
CTACCCAGTCTTGGGTTCTTTGCTATAGCAGCAAGAATGAACTACTATGG
TTTATTATCATACAGTGTTGCATTGAGATTCTGAAAAAGAGCTGAAGAGA
TGGATTGGCCATTAGAGAATAGACTCATAACTTAAACATCTAATTTTCTG
AAAATTAACTGTCCTCTTAACCAATTTCCATATACTCATTGTCCAAAACT
ATTTAGCTGCCTTAGTAGAGAGAAATAGAAACATAGAATAACATTTCCTT
TAAGTAATTGTGGGAAAGATAAAAGCCTACACTGGTGAAAGATGGCAGAT
ACCTAGTCAGAGCAGAGAAAAGAAAATGGAAGGAAAACAATGTCTCTGTA
CTACTAGTCACTTAAAGTATGTGGTCATCGCTAAGTTCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no065_j04.g1 MSMg01no065_j04.g1 CHROMAT_FILE:
MSMg01no065_j04.g1 PHD_FILE: MSMg01no065_j04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:11:07 2005
         (515 letters)



>mm_chr5_85722647_85723559
          Length = 913

 Score =  969 bits (501), Expect = 0.0
 Identities = 511/515 (99%), Gaps = 2/515 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttgtatctcttgaaaataatctgtaaattcaatctccatttttggaagtaaatgcaactg 60
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 201 ttgtatctcttgaaaataatctgtaaattgaatctccatttttggaagtaaatgcaactg 260

                                                                       
Query: 61  gaatcattatataaggagcctgtactgagaaaccttgagtttctgtaaccataaagaccc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaatcattatataaggagcctgtactgagaaaccttgagtttctgtaaccataaagaccc 320

                                                                       
Query: 121 atatagaggtagaaccattgaaaacacacaggttctcgtcagatttttcctagatatttg 180
           ||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||
Sbjct: 321 atatagaggtagaaccattgaaaacaca--ggttctcgtcagatttttcctagatatttg 378

                                                                       
Query: 181 atttcaaacttccaaaaatggtgagcatggaaagtctatagcttttaaactacccagtct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 atttcaaacttccaaaaatggtgagcatggaaagtctatagcttttaaactacccagtct 438

                                                                       
Query: 241 tgggttctttgctatagcagcaagaatgaactactatggtttattatcatacagtgttgc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 tgggttctttgctatagcagcaagaatgaactactatggtttattatcatacagtgttgc 498

                                                                       
Query: 301 attgagattctgaaaaagagctgaagagatggattggccattagagaatagactcataac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 attgagattctgaaaaagagctgaagagatggattggccattagagaatagactcataac 558

                                                                       
Query: 361 ttaaacatctaattttctgaaaattaactgtcctcttaaccaatttccatatactcattg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 ttaaacatctaattttctgaaaattaactgtcctcttaaccaatttccatatactcattg 618

                                                                       
Query: 421 tccaaaactatttagctgccttagtagagagaaatagaaacatagaataacatttccttt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 tccaaaactatttagctgccttagtagagagaaatagaaacatagaataacatttccttt 678

                                              
Query: 481 aagtaattgtgggaaagataaaagcctacactggt 515
           || ||||||||||||||||||||||||||||||||
Sbjct: 679 aattaattgtgggaaagataaaagcctacactggt 713


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 515
Length of database: 913
Length adjustment: 10
Effective length of query: 505
Effective length of database: 903
Effective search space:   456015
Effective search space used:   456015
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)