CCATATTTCGATAATCCGCGGAATTCTTTGTTCATTTCCGAACCCCATTT
TTTAATGGGGTTATTTGACTTTCTGAAGTCCACCTTCTTGAGTTCTTTAT
ATATATTGGATATTAGTCCCCTATCTGATTTAGGATAGGTAAAGATCCTT
TCCCAATCAGTTGGTGGTCTTTTTGTCTTATTGATGGTGTCTTTTGCCTT
GCAGAAACTTTGGAGTTTCATTAGGTCCCATTTGTCAATTCTCGATCTTA
CAGCACAAGCCATTGCTGTTCTGTTCAGGAATTTTTCCCCTGTGCCCATA
TCTTCAAGGCTTTGAAGAGTCACATTTTGTGATCAAAGATGGCATCTATC
AGCCTTCATAGGTCCACAGGAATAATTTTGACATTTATTTTAACGTATTT
GAAACTTGCAGAATTAATTTAAATAAAAGAGTAATTTCAGATCTTCTTTT
ACTTTTAAAAGTCTTGTATTGGATATGTGAAAATTAGATTATATAAAATT
AGAAAGCATATTAAAAGATCAGCTTAAAGGGTTAGGTATAATTATAGGAG
CAGGTGAAATTGAGTAAAATTAGAATGTTGTTTGCAAATGTCAGAACAAA
TTAAACATGCTGAAATGCATATTCAGTTTTCAGAGATTTGTTAAGGAAAA
GCGGGTCAAAGCGACCTTAT

NNNNNNTTTTCCTTTTTCCGTTCNCCTTTTCCTTNNTCCTAGTTTTTTTT
GTTTCCTTTTCTTTNTCTTTTTCTCACTAACTCTTCCTACCACTTCTCTT
TTTTTTCCCCCGCAATTAGCTCAGTTCTTGCTGTTCGGCTCGGTTTGTCT
TCGGCCCGCCTCGTCTTCGTTTTTTCTTTCTTTTTTCTGTTATTCTGTTT
CTTTTTTTTTTTTTTTTTTTTTTTTATTTTCTCCTTTATTGTTCTCTTTT
TTTCTTGTTTTCTCTTTCTTTTCTTTTTCCCCTATTATCTTTTTTTTTTC
TCTTCTTCACTTCCCTTGTCTTTGTAAATTGTTATTAAGTTTTTTTACGC
CTCTTCCTTTAGGTAGTTTAAGTTTGGTTTTGTGTAGATTCTCTGTAATA
TTGTTTGTCCTGTTTAGGGGTGTGTTCGGTTGCTTGTTCTCTCAATGGTT
TTAATTTAATATTGTACTTTCCATTTTTTCAATCCTTTTTTTTTATCGTT
ACTCGTTTGAAGTATTCTACTTACTTATATGAGTATTTTTTATTGCTATA
ATATTT

Query= MSMg01no065_l23.b1 MSMg01no065_l23.b1 CHROMAT_FILE:
MSMg01no065_l23.b1 PHD_FILE: MSMg01no065_l23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:11:20 2005
         (452 letters)



>mm_chr5_55784127_55784978
          Length = 852

 Score =  820 bits (424), Expect = 0.0
 Identities = 442/448 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   tttttaatggggttatttgactttctgaagtccaccttcttgagttctttatatatattg 64
           |||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||
Sbjct: 205 tttttaatggggttatttgattttctgaagttcaccttcttgagttctttatatatattg 264

                                                                       
Query: 65  gatattagtcccctatctgatttaggataggtaaagatcctttcccaatcagttggtggt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gatattagtcccctatctgatttaggataggtaaagatcctttcccaatcagttggtggt 324

                                                                       
Query: 125 ctttttgtcttattgatggtgtcttttgccttgcagaaactttggagtttcattaggtcc 184
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ctttttgtcttattgacggtgtcttttgccttgcagaaactttggagtttcattaggtcc 384

                                                                       
Query: 185 catttgtcaattctcgatcttacagcacaagccattgctgttctgttcaggaatttttcc 244
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 385 catttgtcaattctcgatcttacagcacaagccattgctgttctgttcagcaatttttcc 444

                                                                       
Query: 245 cctgtgcccatatcttcaaggctttgaagagtcacattttgtgatcaaagatggcatcta 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 cctgtgcccatatcttcaaggctttgaagagtcacattttgtgatcaaagatggcatcta 504

                                                                       
Query: 305 tcagccttcataggtccacaggaataattttgacatttattttaacgtatttgaaacttg 364
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 505 tcagccttcataggtccacaggaataattttgacatttattttaaggtatttgaaacttg 564

                                                                       
Query: 365 cagaattaatttaaataaaagagtaatttcagatcttcttttacttttaaaagtcttgta 424
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ctgaattaatttaaataaaagagtaatttcagatcttcttttacttttaaaagtcttgta 624

                                       
Query: 425 ttggatatgtgaaaattagattatataa 452
           ||||||||||||||||||||||||||||
Sbjct: 625 ttggatatgtgaaaattagattatataa 652


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 452
Length of database: 852
Length adjustment: 10
Effective length of query: 442
Effective length of database: 842
Effective search space:   372164
Effective search space used:   372164
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)