MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	MSMg01-065M12
Chromosome	5 (Build37)
Map Location	111,857,894 - 111,858,048
singlet/doublet	singlet
Overlap gene	Mn1
Upstream gene	Galnt9, Noc4l, Ddx51, Ep400, Pus1, Ulk1, Hscb, Chek2, Ttc28, Pitpnb
Downstream gene	A230057G18Rik, Cryba4, Crybb1, Tpst2, Tfip11, 2810002G02Rik, Hps4, EG625424, Asphd2, Sez6l
Link	Open Mouse BAC browser

Click to get alignment info.

name	Galnt9 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:231605 MGI:2677965
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Noc4l (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:100608 MGI:2140843
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ddx51 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:69663 MGI:1916913
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ep400 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:75560 MGI:1276124
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Pus1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:56361 MGI:1929237
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 3 mRNAs

name	Ulk1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:22241 MGI:1270126
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Hscb (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:100900 MGI:2141135
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Chek2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:50883 MGI:1355321
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ttc28 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:209683 MGI:2140873
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 8 mRNAs, 192 ESTs, 1 Protein

name	Pitpnb (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:56305 MGI:1927542
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Mn1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:433938 MGI:1261813
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	A230057G18Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:330166 MGI:2444886
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 15 ESTs

name	Cryba4 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:12959 MGI:102716
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Crybb1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:12960 MGI:104992
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Tpst2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:22022 MGI:1309516
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Tfip11 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:54723 MGI:1930075
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	2810002G02Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:70118 MGI:1917368
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Hps4 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:192232 MGI:2177742
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	EG625424 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:625424 MGI:3648511
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Asphd2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:72898 MGI:1920148
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Sez6l (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:56747 MGI:1935121
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Galnt9 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:38142485 GeneID:231605 MGI:2677965
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 9 transcript_id : NM_198306.1

name	Noc4l (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31981993 GeneID:100608 MGI:2140843
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : nucleolar complex associated 4 homolog (S. cerevisiae) transcript_id : NM_153570.2

name	Ddx51 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:40538824 GeneID:69663 MGI:1916913
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : DEAD (Asp-Glu-Ala-Asp) box polypeptide 51 transcript_id : NM_027156.2

name	Ep400 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:27414492 GeneID:75560 MGI:1276124
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : E1A binding protein p400 transcript_id : NM_029337.1

name	Pus1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:91982769 GeneID:56361 MGI:1929237
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : pseudouridine synthase 1 transcript_id : NM_001025562.2

name	Pus1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:91982773 GeneID:56361 MGI:1929237
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : pseudouridine synthase 1 transcript_id : NM_019700.4

name	Pus1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:91982763 GeneID:56361 MGI:1929237
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : pseudouridine synthase 1 transcript_id : NM_001025561.2

name	Ulk1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:40254401 GeneID:22241 MGI:1270126
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : Unc-51 like kinase 1 (C. elegans) transcript_id : NM_009469.3

name	Hscb (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:23956361 GeneID:100900 MGI:2141135
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : HscB iron-sulfur cluster co-chaperone homolog (E. coli) transcript_id : NM_153571.1

name	Chek2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142377787 GeneID:50883 MGI:1355321
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : CHK2 checkpoint homolog (S. pombe) transcript_id : NM_016681.3

name	Ttc28 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149254130 GeneID:209683 MGI:2140873
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 8 mRNAs, 192 ESTs, 1 Protein product : tetratricopeptide repeat domain 28 transcript_id : XM_001481308.1

name	Pitpnb (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802542 GeneID:56305 MGI:1927542
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : phosphatidylinositol transfer protein, beta transcript_id : NM_019640.3

name	Mn1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:124486984 GeneID:433938 MGI:1261813
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : meningioma 1 transcript_id : NM_001081235.1

name	A230057G18Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94375118 GeneID:330166 MGI:2444886
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 15 ESTs product : RIKEN cDNA A230057G18 gene transcript_id : XM_489103.3

name	Cryba4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:10946671 GeneID:12959 MGI:102716
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : crystallin, beta A4 transcript_id : NM_021351.1

name	Crybb1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130494 GeneID:12960 MGI:104992
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : crystallin, beta B1 transcript_id : NM_023695.2

name	Tpst2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31981951 GeneID:22022 MGI:1309516
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : protein-tyrosine sulfotransferase 2 transcript_id : NM_009419.2

name	Tfip11 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130732 GeneID:54723 MGI:1930075
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : tuftelin interacting protein 11 transcript_id : NM_018783.4

name	2810002G02Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:124249055 GeneID:70118 MGI:1917368
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 2810002G02 gene transcript_id : NM_027323.1

name	Hps4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:42476086 GeneID:192232 MGI:2177742
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : Hermansky-Pudlak syndrome 4 homolog (human) transcript_id : NM_138646.2

name	EG625424 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802475 GeneID:625424 MGI:3648511
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : predicted gene, EG625424 transcript_id : NM_001039228.2

name	Asphd2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:55926228 GeneID:72898 MGI:1920148
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : aspartate beta-hydroxylase domain containing 2 transcript_id : NM_028386.1

name	Sez6l (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:124249081 GeneID:56747 MGI:1935121
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : seizure related 6 homolog like transcript_id : NM_019982.2

name	Galnt9 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:38142486 GeneID:231605 MGI:2677965
definition	GO_function : GO:0016740 - transferase activity [Evidence IEA] codon_start : 1 product : UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 9 protein_id : NP_938048.1

name	Noc4l (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31981994 CCDS:CCDS19527.1 GeneID:100608 MGI:2140843
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA]; GO:0005634 - nucleus [Evidence IEA]; GO:0005732 - small nucleolar ribonucleoprotein complex [Evidence ISS] GO_function : GO:0005515 - protein binding [Evidence ISS]; GO:0030515 - snoRNA binding [Evidence ISS] GO_process : GO:0006365 - 35S primary transcript processing [Evidence ISS] codon_start : 1 product : nucleolar complex associated 4 homolog protein_id : NP_705798.2

name	Ddx51 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:40538825 CCDS:CCDS19528.1 GeneID:69663 MGI:1916913
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0008026 - ATP-dependent helicase activity [Evidence IEA]; GO:0004386 - helicase activity [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0003723 - RNA binding [Evidence IEA] GO_process : GO:0007046 - ribosome biogenesis [Evidence IEA]; GO:0006364 - rRNA processing [Evidence IEA] codon_start : 1 product : DEAD (Asp-Glu-Ala-Asp) box polypeptide 51 protein_id : NP_081432.2

name	Ep400 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:27414493 CCDS:CCDS19529.1 GeneID:75560 MGI:1276124
definition	GO_component : GO:0005575 - cellular_component [Evidence ND]; GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0008026 - ATP-dependent helicase activity [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0004386 - helicase activity [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]; GO:0003674 - molecular_function [Evidence ND]; GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA] GO_process : GO:0008150 - biological_process [Evidence ND]; GO:0016568 - chromatin modification [Evidence IEA] codon_start : 1 exception : mismatches in translation product : Domino protein_id : NP_083613.1

name	Pus1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:70906470 CCDS:CCDS19531.1 GeneID:56361 MGI:1929237
definition	GO_component : GO:0005730 - nucleolus [Evidence IDA]; GO:0005634 - nucleus [Evidence IDA]; GO:0005667 - transcription factor complex [Evidence IDA] GO_function : GO:0003677 - DNA binding [Evidence IDA]; GO:0016853 - isomerase activity [Evidence IEA]; GO:0030374 - ligand-dependent nuclear receptor transcription coactivator activity [Evidence IDA]; GO:0005515 - protein binding [Evidence IPI]; GO:0004730 - pseudouridylate synthase activity [Evidence IEA]; GO:0016439 - tRNA-pseudouridine synthase activity [Evidence IMP] [Evidence IDA] GO_process : GO:0045944 - positive regulation of transcription from RNA polymerase II promoter [Evidence IDA]; GO:0008033 - tRNA processing [Evidence IEA]; GO:0031119 - tRNA pseudouridine synthesis [Evidence IDA] codon_start : 1 note : isoform 2 is encoded by transcript variant 2 product : pseudouridine synthase 1 isoform 2 protein_id : NP_062674.2

name	Pus1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:70906468 CCDS:CCDS19530.1 GeneID:56361 MGI:1929237
definition	GO_component : GO:0005730 - nucleolus [Evidence IDA]; GO:0005634 - nucleus [Evidence IDA]; GO:0005667 - transcription factor complex [Evidence IDA] GO_function : GO:0003677 - DNA binding [Evidence IDA]; GO:0016853 - isomerase activity [Evidence IEA]; GO:0030374 - ligand-dependent nuclear receptor transcription coactivator activity [Evidence IDA]; GO:0005515 - protein binding [Evidence IPI]; GO:0004730 - pseudouridylate synthase activity [Evidence IEA]; GO:0016439 - tRNA-pseudouridine synthase activity [Evidence IMP] [Evidence IDA] GO_process : GO:0045944 - positive regulation of transcription from RNA polymerase II promoter [Evidence IDA]; GO:0008033 - tRNA processing [Evidence IEA]; GO:0031119 - tRNA pseudouridine synthesis [Evidence IDA] codon_start : 1 note : isoform 1 is encoded by transcript variant 1 product : pseudouridine synthase 1 isoform 1 protein_id : NP_001020732.1

name	Pus1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:70906472 GeneID:56361 MGI:1929237
definition	GO_component : GO:0005730 - nucleolus [Evidence IDA]; GO:0005634 - nucleus [Evidence IDA]; GO:0005667 - transcription factor complex [Evidence IDA] GO_function : GO:0003677 - DNA binding [Evidence IDA]; GO:0016853 - isomerase activity [Evidence IEA]; GO:0030374 - ligand-dependent nuclear receptor transcription coactivator activity [Evidence IDA]; GO:0005515 - protein binding [Evidence IPI]; GO:0004730 - pseudouridylate synthase activity [Evidence IEA]; GO:0016439 - tRNA-pseudouridine synthase activity [Evidence IMP] [Evidence IDA] GO_process : GO:0045944 - positive regulation of transcription from RNA polymerase II promoter [Evidence IDA]; GO:0008033 - tRNA processing [Evidence IEA]; GO:0031119 - tRNA pseudouridine synthesis [Evidence IDA] codon_start : 1 note : isoform 3 is encoded by transcript variant 3 product : pseudouridine synthase 1 isoform 3 protein_id : NP_001020733.1

name	Ulk1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:40254402 CCDS:CCDS19532.1 GeneID:22241 MGI:1270126
definition	GO_component : GO:0030659 - cytoplasmic vesicle membrane [Evidence IDA]; GO:0005624 - membrane fraction [Evidence IDA]; GO:0043005 - neuron projection [Evidence IDA] GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0016301 - kinase activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0004672 - protein kinase activity [Evidence IEA]; GO:0004674 - protein serine/threonine kinase activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA] GO_process : GO:0007409 - axonogenesis [Evidence IDA]; GO:0006468 - protein amino acid phosphorylation [Evidence IEA]; GO:0007265 - Ras protein signal transduction [Evidence IDA] codon_start : 1 product : Unc-51 like kinase 1 protein_id : NP_033495.2

name	Hscb (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:23956362 GeneID:100900 MGI:2141135
definition	GO_component : GO:0005739 - mitochondrion [Evidence IEA] GO_function : GO:0051087 - chaperone binding [Evidence IEA]; GO:0031072 - heat shock protein binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA] GO_process : GO:0006457 - protein folding [Evidence IEA] codon_start : 1 product : J-type co-chaperone HSC20 protein_id : NP_705799.1

name	Chek2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:7710088 CCDS:CCDS19533.1 GeneID:50883 MGI:1355321
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0016301 - kinase activity [Evidence IEA]; GO:0000287 - magnesium ion binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0004672 - protein kinase activity [Evidence IEA]; GO:0004674 - protein serine/threonine kinase activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA] GO_process : GO:0007049 - cell cycle [Evidence IEA]; GO:0006468 - protein amino acid phosphorylation [Evidence IEA] codon_start : 1 note : protein kinase Chk2; Cds1 homolog; Rad53 homolog product : CHK2 checkpoint homolog protein_id : NP_057890.1

name	Ttc28 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149254131 GeneID:209683 MGI:2140873
definition	codon_start : 1 exception : unclassified translation discrepancy note : overriding stop codons product : similar to OTTHUMP00000028696 protein_id : XP_001481358.1 transl_except : (pos:111706166..111706168,aa:OTHER) transl_except : (pos:111706175..111706177,aa:OTHER) transl_except : (pos:111706232..111706234,aa:OTHER) transl_except : (pos:111707515..111707517,aa:OTHER) transl_except : (pos:111709188..111709190,aa:OTHER) transl_except : (pos:111710905..111710907,aa:OTHER) transl_except : (pos:111711823..111711825,aa:OTHER) transl_except : (pos:111711901..111711903,aa:OTHER) transl_except : (pos:111712969..111712971,aa:OTHER) transl_except : (pos:111712978..111712980,aa:OTHER) transl_except : (pos:111713014..111713016,aa:OTHER) transl_except : (pos:111713023..111713025,aa:OTHER) transl_except : (pos:111714019..111714021,aa:OTHER) transl_except : (pos:111714265..111714267,aa:OTHER) transl_except : (pos:111714268..111714270,aa:OTHER) transl_except : (pos:111714493..111714495,aa:OTHER) transl_except : (pos:111714598..111714600,aa:OTHER) transl_except : (pos:111714775..111714777,aa:OTHER) transl_except : (pos:111715003..111715005,aa:OTHER) transl_except : (pos:111715171..111715173,aa:OTHER) transl_except : (pos:111715183..111715185,aa:OTHER) transl_except : (pos:111715393..111715395,aa:OTHER)

name	Pitpnb (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:9790159 GeneID:56305 MGI:1927542
definition	GO_component : GO:0005622 - intracellular [Evidence IEA] GO_function : GO:0008289 - lipid binding [Evidence IEA]; GO:0005543 - phospholipid binding [Evidence ISS] GO_process : GO:0001701 - embryonic development (sensu Mammalia) [Evidence IMP]; GO:0006810 - transport [Evidence IEA] codon_start : 1 note : phosphatidylinositol transfer protein beta isoform; Pitp beta; phosphotidylinositol transfer protein, beta product : phosphatidylinositol transfer protein, beta protein_id : NP_062614.1

name	Mn1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:124486985 GeneID:433938 MGI:1261813
definition	GO_process : GO:0001957 - intramembranous ossification [Evidence IMP] codon_start : 1 product : meningioma 1 protein_id : NP_001074704.1

name	A230057G18Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:82899261 GeneID:330166 MGI:2444886
definition	codon_start : 1 product : hypothetical protein protein_id : XP_489103.2

name	Cryba4 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:10946672 CCDS:CCDS19536.1 GeneID:12959 MGI:102716
definition	GO_component : GO:0005737 - cytoplasm [Evidence IEA] GO_function : GO:0005212 - structural constituent of eye lens [Evidence IEA] GO_process : GO:0007423 - sensory organ development [Evidence IEA] codon_start : 1 function : lens structural protein product : crystallin, beta A4 protein_id : NP_067326.1

name	Crybb1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:12963789 CCDS:CCDS19537.1 GeneID:12960 MGI:104992
definition	GO_component : GO:0005737 - cytoplasm [Evidence IEA] GO_function : GO:0005212 - structural constituent of eye lens [Evidence IEA] GO_process : GO:0007423 - sensory organ development [Evidence IEA] codon_start : 1 product : crystallin, beta B1 protein_id : NP_076184.1

name	Tpst2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6678421 CCDS:CCDS19538.1 GeneID:22022 MGI:1309516
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0008476 - protein-tyrosine sulfotransferase activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA] codon_start : 1 product : protein-tyrosine sulfotransferase 2 protein_id : NP_033445.1

name	Tfip11 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:10190660 CCDS:CCDS19539.1 GeneID:54723 MGI:1930075
definition	GO_component : GO:0005737 - cytoplasm [Evidence ISS]; GO:0005578 - extracellular matrix (sensu Metazoa) [Evidence IDA]; GO:0005622 - intracellular [Evidence IEA] [Evidence NAS]; GO:0005634 - nucleus [Evidence ISS] [Evidence IEA] GO_function : GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI] GO_process : GO:0030154 - cell differentiation [Evidence NAS]; GO:0030198 - extracellular matrix organization and biogenesis [Evidence NAS]; GO:0001503 - ossification [Evidence IEA]; GO:0045045 - secretory pathway [Evidence NAS] codon_start : 1 note : tuftelin-interacting protein 33; tuftelin-interacting protein, 39 kD product : tuftelin interacting protein 11 protein_id : NP_061253.2

name	2810002G02Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:124249056 GeneID:70118 MGI:1917368
definition	GO_process : GO:0048511 - rhythmic process [Evidence IEA] codon_start : 1 note : SRR1-like product : sensitivity to red light reduced-like protein_id : NP_081599.1

name	Hps4 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:42476087 CCDS:CCDS19540.1 GeneID:192232 MGI:2177742
definition	GO_component : GO:0005737 - cytoplasm [Evidence ISS]; GO:0016023 - cytoplasmic membrane-bound vesicle [Evidence IDA]; GO:0005764 - lysosome [Evidence ISS]; GO:0042470 - melanosome [Evidence ISS]; GO:0005624 - membrane fraction [Evidence ISS] GO_function : GO:0042803 - protein homodimerization activity [Evidence ISS] GO_process : GO:0007599 - hemostasis [Evidence ISS]; GO:0007040 - lysosome organization and biogenesis [Evidence ISS]; GO:0030318 - melanocyte differentiation [Evidence IMP]; GO:0006996 - organelle organization and biogenesis [Evidence IMP]; GO:0048081 - positive regulation of cuticle pigmentation [Evidence ISS]; GO:0048075 - positive regulation of eye pigmentation [Evidence ISS]; GO:0050821 - protein stabilization [Evidence ISS]; GO:0006605 - protein targeting [Evidence ISS] codon_start : 1 exception : mismatches in translation note : light ear product : Hermansky-Pudlak syndrome 4 homolog protein_id : NP_619587.2

name	EG625424 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:85986623 GeneID:625424 MGI:3648511
definition	codon_start : 1 exception : mismatches in translation product : hypothetical protein LOC625424 protein_id : NP_001034317.1

name	Asphd2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:55926229 CCDS:CCDS19542.1 GeneID:72898 MGI:1920148
definition	GO_component : GO:0030176 - integral to endoplasmic reticulum membrane [Evidence IEA] GO_function : GO:0004597 - peptide-aspartate beta-dioxygenase activity [Evidence IEA] GO_process : GO:0018193 - peptidyl-amino acid modification [Evidence IEA] codon_start : 1 product : aspartate beta-hydroxylase domain containing 2 protein_id : NP_082662.1

name	Sez6l (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:124249082 GeneID:56747 MGI:1935121
definition	GO_component : GO:0005575 - cellular_component [Evidence ND] GO_function : GO:0003674 - molecular_function [Evidence ND] GO_process : GO:0008150 - biological_process [Evidence ND] codon_start : 1 note : acupuncture induced gene 1 product : seizure related 6 homolog like protein_id : NP_064366.2

clone name	MSMg01-336I11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-159A18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-350E24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-128O05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-172A19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-172C18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-084E12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-346O17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-382F20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-384G20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-330I02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-538O12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-233D15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-433E20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-381C12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-071H14
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-074H09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-455G11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-191B10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-206O04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-186B09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-339I05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-485F03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-047G05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-388E05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-346A05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-069K03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-119D23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-337D07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-299H11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-198J02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-537N15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-372P17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-272H03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-452N07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-401I09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-337P08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-306I10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-507E02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-110O19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-388A21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-217G07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-449F16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-362P19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-423K16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-170C04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-148G23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-512D10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-358O01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-128N02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-150G15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-449L20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-054M06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-065M12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-313N10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-170F09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-161E05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-067F09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-146C20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-502A22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-487O20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-180D13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-494J20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-153C07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-380M24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-375L23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-134I17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-501A09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-136G06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-330I06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-195C19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-307F19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-372I02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-291H15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-522F13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-300D17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-142J02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-373C19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-322D09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-323A14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-353P22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-524L19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-341E12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-507K01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-459O24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-305N10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-060K12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-291H16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-405F11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-272I19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-274B19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-270L02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-289P06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-166C10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-289H14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-186N01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-227C20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-307C18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-332A08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-021A08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-195B03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-268E12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-048J16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-146B09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-125P04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-297K17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-230A04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-295F16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-148M02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-210A22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-292A16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-239B19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-335N09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-142M14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-336L15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-281D11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-208C12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-350I16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-046F14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-323J01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-054E21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-091N22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-337J07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-322O23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-167K06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-336D06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-348M02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-071D23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-037C02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-170N20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-210C13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-238P05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-087P21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-187P11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-232F21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-137H09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-027C08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-267J19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-257O15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-307N11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-101E24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-267O04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-270J22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-117N03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-241H17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-163B09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-163K02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-174E03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-345M14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-058H15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-152A18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-049D09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-248K24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-169D10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-300O18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-026L12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-169I06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-347P13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-007J15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-049J23
singlet/doublet	singlet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	MSMg01-065M12.T7 (MSMg01no065_m12.b1)	MSMg01-065M12.TJ (MSMg01no065_m12.g1)
ACC	AG290909	AG290910
length	697	687
length of high quality (start - end)	215 (66 - 280)	156 (77 - 232)
definition	CHROMAT_FILE: MSMg01no065_m12.b1 PHD_FILE: MSMg01no065_m12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:11:23 2005	CHROMAT_FILE: MSMg01no065_m12.g1 PHD_FILE: MSMg01no065_m12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:11:23 2005
singlet/doublet	---	singlet
BLAST hit	no hit data	unique
sequence	TTATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAATCCGCG GAATTCAAACTGTTCCCATACTCAAGTTCCACCCAGGGAAGGGACCCAAG AAGCCAGTGCTATCCATCAAAACCATCCGTGACTCTGTCTCCCCATCTCA GACTAGCCCCATGCTTGGTACAGTACAGGTGATCAGCAAATGTTTCTAGA ATGGATTAGAATAAACCTGTGCTAGGGATTGCCCCACTAAAACACAGCCT GGACAGAGTGCCTGCTTTTCCAGCATGTGCTCAATGTTAGGGCACACACT GTTCAAACACTGCTCTATCTGCTCTGTTCATTGTCGCTGTGTATATGGTA CAGGTACCAGCGAGCCACAACGCGTAACGCATTGTTTTCGCCCACCATCA TTAGGACCACTCCACCTTATTGTCTTTTTTTCTCTCGCTTTTTCCCATAT TCCGCTTTCCCCACGCTTACTCTATTGTTCCCTTTGTTCACCTCTTGTTC CCGCCCTGCGTTTATAATTAACCAGCTCCTTATTTCTTTCACCTTACCCT ACATCTTCCTCCTGATTTCCCCGCTTCCTTTAATTATATTTTGTAAACCC TTGCCCTTTCCCTTTTTTTTCCCCCTTCCAATTTTTTACTGCTATAATTC GTTCCTTTGGTTTATTCTTTGCCTATATTATATTCCCCTTTCCCCCC	TCGCAATGCAGTTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXATTAACTATCACCTCACGTTCCAC GAACTCCCATATCCAACCAGGAAAGCTAGACAAAGCATACTAGGGTTCCC AATTCCACGACAGACTCATGGTCCCATTCACTCCATGTGAAGCCCAAGGC ATCAGAAAAAACAGAACATCCTGTCTGTCAGTCCCAGGAAAATGCTTTTC CCATGCCCCAGTGTCAAATTTTGAAAAAACCTTTCAGCCCAGAAGACTCC TTACCTACCTATCAGCACATTATTTTATAAAGTAATTTTAAATCTCGGAG TTCAAATACGGGGTGGCAGGCAGGACGGAAAGGACATGAGGTTTGCTACC TCCCCGGATTCCGTTAACACCTCCCCCAGTTCAATCTGCTATCTTAAGTT TCTTGTATACGACTCTGGATCACACCTCTCCGCGTGTTTTTCAGTAATAG AGCTATTTTGACACCCTCACAGGAAAATAGGCCCTAGCATGTATTTACCA CCCAGATTATCTCATCTAAATTAAGTTCGAGCCCCAATAATCGATATATA TATCTTAACCGCGATGTCCGATTTTTTATCTGACCTCTAAGTTGTGCTTA CCTTGGTGTTAAGCTTAATTTTTTCCTCCTTTTCTTT
quality values	Open. Hide. 8 8 8 8 10 8 8 9 8 10 10 17 24 19 14 14 20 25 29 47 47 39 24 26 15 14 11 17 11 14 14 14 21 11 10 10 10 9 9 6 8 8 8 9 9 12 18 21 26 24 33 37 23 21 10 10 10 13 13 17 15 10 10 9 11 21 23 28 28 39 23 30 22 22 22 31 28 24 19 17 17 19 19 18 19 18 22 28 30 32 23 20 20 28 28 28 30 22 22 14 14 14 14 14 19 19 37 40 30 30 30 44 42 42 31 28 21 29 24 21 13 15 12 15 15 29 25 42 31 30 28 32 32 37 39 39 35 37 37 37 37 35 35 29 42 32 38 24 19 11 26 24 32 32 20 20 20 32 38 37 37 37 41 52 44 44 57 52 43 43 43 42 43 43 43 38 35 32 37 23 29 46 27 21 10 20 16 16 14 14 24 38 43 37 43 43 43 35 32 32 20 20 20 32 32 27 27 11 11 11 26 26 36 36 27 33 33 43 43 33 27 20 20 24 24 24 19 19 36 36 14 20 20 32 27 29 33 37 44 44 44 30 32 13 13 13 13 15 18 30 14 14 32 32 32 28 23 23 25 36 42 43 44 37 37 30 30 25 24 29 30 30 30 30 28 25 25 25 24 28 18 14 13 13 11 16 16 16 11 12 11 12 12 18 18 30 28 24 25 15 14 14 15 15 18 21 15 13 13 24 28 34 30 20 13 11 11 11 11 11 11 9 8 8 8 8 8 12 12 12 15 24 12 10 10 10 13 10 13 15 25 13 11 10 10 10 10 12 15 20 20 28 28 25 25 16 22 16 12 11 11 11 18 12 15 14 15 15 11 11 11 11 11 11 15 14 12 9 6 8 6 6 8 8 10 13 13 10 10 12 12 12 12 11 10 11 15 12 11 10 11 11 11 8 8 10 10 10 8 14 11 14 9 8 8 8 8 8 10 11 13 10 8 6 6 10 10 16 20 17 15 8 8 8 8 8 8 12 12 22 19 16 14 12 12 9 8 8 8 8 10 10 10 10 9 8 8 8 7 8 13 10 8 6 6 6 8 10 10 7 6 8 6 8 8 9 10 14 10 10 10 11 8 12 7 7 7 8 8 8 10 10 10 8 8 8 8 10 10 10 8 8 6 6 8 8 9 9 7 8 8 8 8 6 6 6 6 10 10 8 8 10 8 8 8 8 8 8 8 8 8 8 11 12 12 12 8 8 8 8 8 8 8 8 8 12 15 9 10 10 8 8 8 10 10 10 16 16 16 18 17 10 8 8 8 8 9 9 10 8 8 8 8 8 11 13 10 12 10 10 8 10 8 8 8 6 6 6 6 10 13 8 8 8 8 8 8 10 10 8 11 11 11 11 8 8 8 8 10 8 16 16 20 15 19 23 12 10 10 9 9 9 12 16 13 12 11 10 10 9 10 9 10 12 15 13 13 10 10 10 10 10 11 11 11 11 11 8 8 8 8 10 10 10 13 9 8 8 8 8 8 8 8 8 10 8 8 10 8 8 6 6 6 6 9 10 8 8 10 10 6 6 8 8 9 10 8 8 8 8 8 8 8 13 21 18 13	Open. Hide. 9 9 9 9 12 12 13 12 10 9 9 10 9 9 10 10 10 16 20 25 25 23 26 16 14 23 23 15 19 24 30 34 27 20 9 9 9 9 10 10 11 9 8 8 8 8 8 10 8 9 9 9 12 26 26 37 37 30 28 18 19 11 10 11 11 12 12 16 15 12 11 13 19 21 25 27 33 28 29 34 30 30 30 29 29 29 22 22 28 37 37 39 39 42 43 28 24 28 28 26 26 41 41 39 34 31 18 18 11 11 11 21 18 21 21 22 29 29 29 23 23 23 20 20 31 32 43 48 34 34 31 31 18 24 28 37 33 43 43 39 39 26 26 17 19 19 28 28 30 22 22 11 11 11 23 17 22 24 22 28 36 37 43 42 42 37 30 30 42 42 42 42 37 37 41 47 46 46 41 36 38 23 28 23 24 21 17 19 16 23 24 20 20 27 32 32 32 32 24 24 32 36 36 22 27 27 43 43 52 43 43 32 20 19 20 27 32 32 29 32 32 35 35 35 26 28 19 19 19 20 13 10 13 15 24 15 14 14 27 20 20 16 18 16 19 24 30 42 44 32 32 30 28 28 25 23 22 21 18 15 11 11 11 12 15 15 15 12 12 12 12 12 15 24 26 36 25 28 28 33 28 28 24 24 15 15 19 19 14 20 12 12 11 13 13 28 34 34 32 32 25 25 9 9 9 9 9 10 23 18 18 12 25 22 35 26 25 21 20 15 10 11 9 9 10 8 8 8 8 13 9 11 11 11 11 11 28 28 37 28 28 12 12 11 16 16 19 15 9 9 9 11 19 11 20 20 32 31 24 23 14 13 13 18 18 19 19 15 13 12 12 12 10 10 8 8 8 8 11 15 24 24 24 32 15 15 12 12 11 11 11 11 11 11 10 11 11 16 10 12 12 15 12 18 21 15 15 12 11 8 8 8 8 10 12 12 11 8 8 8 8 13 11 21 17 24 12 12 8 8 8 8 10 10 14 13 12 18 19 24 19 10 10 9 10 8 8 8 8 13 18 23 12 13 8 7 8 8 9 8 8 8 8 8 10 13 8 8 8 8 8 10 10 13 13 12 12 12 12 10 10 8 8 8 8 10 15 10 11 10 9 8 8 8 8 8 10 8 8 8 8 12 12 8 8 8 8 9 8 8 8 8 8 12 19 20 12 12 13 12 10 8 8 8 8 10 10 11 10 11 10 10 10 15 13 10 9 9 7 8 10 9 9 9 15 11 9 9 8 8 8 8 10 8 8 10 10 8 12 13 13 13 15 10 10 10 10 10 8 8 8 10 11 11 18 17 14 10 10 10 10 10 13 15 15 8 10 8 8 8 8 12 11 11 11 8 8 6 6 8 8 8 8 8 8 8 8 8 8 8 9 11 8 11 12 12 8 8 8 8 8 10 11 19 18 12 10 10 8 12 11 8 8 8 8 6 6 8 6 8 9 9 8 8 8 6 6 8 10 8 8 8 8 8 8 8 11 9 9 9 9 9 9 10 8 8 8 7 6 8 8 10 16 12 11 11 11 13 18 15 13 11 10 10 10 15 13

Alignment Information

BAC End 1

BAC End 2

Query= MSMg01no065_m12.g1 MSMg01no065_m12.g1 CHROMAT_FILE:
MSMg01no065_m12.g1 PHD_FILE: MSMg01no065_m12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:11:23 2005
         (156 letters)



>mm_chr5_111857694_111858249
          Length = 556

 Score =  284 bits (147), Expect = 1e-81
 Identities = 153/155 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   attaactatcacctcacgttccacgaactcccatatccaaccaggaaagctagacaaagc 60
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 355 attaactatcacctcacgttccacgaactcccaaatccaaccaggaaagctagacaaagc 296

                                                                       
Query: 61  atactagggttcccaattccacgacagactcatggtcccattcactccatgtgaagccca 120
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 atactagggttcccaactccacgacagactcatggtcccattcactccatgtgaagccca 236

                                              
Query: 121 aggcatcagaaaaaacagaacatcctgtctgtcag 155
           |||||||||||||||||||||||||||||||||||
Sbjct: 235 aggcatcagaaaaaacagaacatcctgtctgtcag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 156
Length of database: 556
Length adjustment: 8
Effective length of query: 148
Effective length of database: 548
Effective search space:    81104
Effective search space used:    81104
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information