Query= MSMg01no065_m23.b1 MSMg01no065_m23.b1 CHROMAT_FILE:
MSMg01no065_m23.b1 PHD_FILE: MSMg01no065_m23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:11:25 2005
(265 letters)
>mm_chr5_69596241_69596905
Length = 665
Score = 462 bits (239), Expect = e-135
Identities = 254/259 (98%), Gaps = 2/259 (0%)
Strand = Plus / Plus
Query: 8 gaattcataaagttt-cttttggtgtgaccagctggcatttctactttcatcattaaacc 66
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 gaattcataaagttttcttttggtgtgaccagctggcatttctactttcatcattaaacc 267
Query: 67 ctaaaagcaatgagaagtcaagaagtggtgtttctctgtcataagttcaatggatttcac 126
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 268 ctaaaagcaatgagaagtcaagaagtggtatttctctgtcataagttcaatggatttcac 327
Query: 127 ttattaatttactgaatttgatcgaactgaatctctctagtctttcaaaacggatttatt 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 ttattaatttactgaatttgatcgaactgaatctctctagtctttcaaaacggatttatt 387
Query: 187 tttaaatcaagaggatgtcttaagaaaactattactactgattattgaatgaaaattaat 246
||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 tttaaattaaaaggatgtcttaagaaaactattactactgattattgaatgaaaattaat 447
Query: 247 gaaaaaaatttaaataaag 265
|||||||||| ||||||||
Sbjct: 448 gaaaaaaatt-aaataaag 465
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 265
Length of database: 665
Length adjustment: 9
Effective length of query: 256
Effective length of database: 656
Effective search space: 167936
Effective search space used: 167936
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no065_m23.g1 MSMg01no065_m23.g1 CHROMAT_FILE:
MSMg01no065_m23.g1 PHD_FILE: MSMg01no065_m23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:11:25 2005
(502 letters)
>mm_chr5_69717537_69718438
Length = 902
Score = 886 bits (458), Expect = 0.0
Identities = 485/494 (98%)
Strand = Plus / Minus
Query: 1 atgtgtgtaaccccggagacaagaaaatatgtgaagtagatctttaaaccgagacaatgg 60
|||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 694 atgtgtgtaatcccggagacaagaaaatatgtgaagtagatctttaaacagagacaatgg 635
Query: 61 cagtgtacactcatgctgcatggtgctctttacatgagaaattcttacgtctataaatat 120
|||| ||||||| |||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 634 cagtttacactcgtgctgcatggtgctctttacatgagaaattcttatgtctataaatat 575
Query: 121 tttcaacttttataacatttagccttatcacttcattacatacaaacaattacataacat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 574 tttcaacttttataacatttagccttatcacttcattacatacaaacaattacataacat 515
Query: 181 acacacgtgtagctacgtgaaataacaattctcatatatttcataaagatcttccttttt 240
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 acacatgtgtagctacgtgaaataacaattctcatatatttcataaagatcttccttttt 455
Query: 241 aaatatatgcttgaaaaaaatgaacgtgtatttaatttgtctttcttatattggtagttt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 aaatatatgcttgaaaaaaatgaacgtgtatttaatttgtctttcttatattggtagttt 395
Query: 301 acttttgttttcacctacattgagtgctttaaaacatgatttctttattttaatgtactc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 acttttgttttcacctacattgagtgctttaaaacatgatttctttattttaatgtactc 335
Query: 361 atctaaaagattgctttagctggtgcatgttagagcatcatctgtaattggtctgcttca 420
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 atctaaaagattgttttagctggtgcatgttagagcatcatctgtaattggtctgcttca 275
Query: 421 tgatgccttcatctggtcatatgggatcctctgaatatatgtctctgatgggaattgctg 480
||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 274 tgatgccttcatcgggtcatatgggatcctctgactatatgtctctgatgggaattgctg 215
Query: 481 ggcttcaggctgtg 494
||||||||||||||
Sbjct: 214 ggcttcaggctgtg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 502
Length of database: 902
Length adjustment: 10
Effective length of query: 492
Effective length of database: 892
Effective search space: 438864
Effective search space used: 438864
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
