XXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAGAGAATCCGCGGAATTCA
ACAGAATCTTCCTATATCCTGAGCAGCTAACACCATGCCTAACATGAGGT
AGATACACTATCCTTATTCCTGAAGCAATGACTGATCAGAAATTGAAATG
AGCCAGGACCATAAGAGAAAAGTTTTCTTATCCCTTTGGCATGGCTAAAT
TATATATATATGCATGTTGAATATATTACATGCTCAGATATTGCTTACAT
ACAATGCATACACACATATATGTATATACATATATATATACATATATATA
TACATATACATAAGCAATAACAGAACATATCATATATGCATCAATACACA
TATATGCTCACATATAGAAAATCTTTGCATCCCAGACCCAAAAGTCAATA
ACTTCCTCACTCATTATATTTATAAGCACTTTAATTGAAATAATAAAGCC
CCAGACAACTGAATAATATATGAAGAGATAACTTGTCCTTTGTCACAGTT
CTCTGCTGTGACATGCAAATATTTCTACCATGTACAATTTATAGTCGTTT
TTCTGAAGCAAATACAATAATTGTCTCCATCTTACAGACAAAGAAACTGT
CACCCAGAAGAGTAATTTGTCTGGAGCCACACAATGGAAGCCCTCAACTC
TATCTATGGCCTTTCTTTGCATGGAATTTAACCTAGAACTTTCCAAACTC
ATAG

AATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTTGAGAAGGACTTTGTTGTGAAATTCTA
AAGATGAACTATATTGTTAGTTAGGCTGATTTGATGATATCTGGAGCAGA
TGCACCAGCCAATGTCTGATGTCTGCTGGAATTAAATGAGCTATCATTTT
ATATCCAAGGAAATGGATGGATTGATCAAGATCAACATTCAAGATGATGC
CTTACAAACCAAAGGATGTACAGTCGCGTGCTATATTTAGTATACACAGT
ATAGAGATCTCGGAAGACAAATTCAGGTGTTTGATCACTTTGATGAGCTC
TTGCTATGCAAGTGAAATGCTCTGAGTTCTGGCTGGTGATTGCCCCTATA
TGAACTAGCATTGATTTGACAAGACTATATGCATCTCCTCTCATGTCTAT
GAAGCGTAGTCTTCAACTGATGGGCGTACTTCAATAATTCTTGATGTTGA
ATCTCACTCATTAACCTTGTTATCACCTGGACAGATCATGGCCCTATCTG
TACTCCTCCCTTTGTAGAACGTATTTCTCTGTATAGATTCCTCTAAAGCA
CTAGTGTAAAGTATCCGCGAGAACCCGATACCTATTTCGCTCGATACTAT
CTGCTTATTGCTCACCCCTGTTTTTTGACAACGTACTCTGGGCACAGTTA
TTTTTTCTCC

Query= MSMg01no066_a16.b1 MSMg01no066_a16.b1 CHROMAT_FILE:
MSMg01no066_a16.b1 PHD_FILE: MSMg01no066_a16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:11:42 2005
         (548 letters)



>mm_chr5_41801428_41802375
          Length = 948

 Score =  998 bits (516), Expect = 0.0
 Identities = 536/544 (98%), Gaps = 4/544 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaacagaatcttcctatatcctgagcagctaacaccatgcctaacatgaggtaga 64
           |||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaacagaatcttagtatatcctgagcagctaacaccatgcctaacatgaggtaga 264

                                                                       
Query: 65  tacactatccttattcctgaagcaatgactgatcagaaattgaaatgagccaggaccata 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tacactatccttattcctgaagcaatgactgatcagaaattgaaatgagccaggaccata 324

                                                                       
Query: 125 agagaaaagttttcttatccctttggcatggctaaattatatatatatgcatgttgaata 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 agagaaaagttttcttatccctttggcatggctaaattatatatatatgcatgttgaata 384

                                                                       
Query: 185 tattacatgctcagatattgcttacatacaatgcatacacacatatatgtatatacatat 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||
Sbjct: 385 tattacatgctcagatattgcttacatacaatgcatacacacatatatgtatatac--at 442

                                                                       
Query: 245 atatatacatatatatatacatatacataagcaataacagaacatatcatatatgcatca 304
           ||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 atatatac--atatatatacatatacataagcaataacagaacatatcatatatgcatca 500

                                                                       
Query: 305 atacacatatatgctcacatatagaaaatctttgcatcccagacccaaaagtcaataact 364
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 501 atacacatatatgctcacatatagaaaatctttgcaccccagacccaaaagtcaataact 560

                                                                       
Query: 365 tcctcactcattatatttataagcactttaattgaaataataaagccccagacaactgaa 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tcctcactcattatatttataagcactttaattgaaataataaagccccagacaactgaa 620

                                                                       
Query: 425 taatatatgaagagataacttgtcctttgtcacagttctctgctgtgacatgcaaatatt 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 taatatatgaagagataacttgtcctttgtcacagttctctgctgtgacatgcaaatatt 680

                                                                       
Query: 485 tctaccatgtacaatttatagtcgtttttctgaagcaaatacaataattgtctccatctt 544
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 681 tctaccatgtacaatttatagtcatttttctgaagcaaatacaataattgtctccatctt 740

               
Query: 545 acag 548
           ||||
Sbjct: 741 acag 744


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 42
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 548
Length of database: 948
Length adjustment: 10
Effective length of query: 538
Effective length of database: 938
Effective search space:   504644
Effective search space used:   504644
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)