This page provides previous versions of nucleotide polymorphisms of MSM/Ms and JF1/Ms strains, corresponding to GRCm38 coordinate by Liftover from GRCm37.
Previous ver.
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RIKEN MSM/Ms Mouse BAC clones & Library
BAC clone ordering.
BAC Information
Click to search
Search Parameter
BAC name
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search by nearby gene name.
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Search Result
BAC
Clone Name
MSMg01-066A16
Chromosome
5 (Build37)
Map Location
41,801,632 - 41,802,171
singlet/doublet
singlet
Overlap gene
none
Upstream gene
LOC208522
Downstream gene
Rab28
,
Bapx1
,
A230054D04Rik
,
LOC384308
,
LOC100040588
Link
Open Mouse BAC browser
Click to get alignment info.
name
LOC208522
(CDS detail)
type
gene
link
vega
ensembl
xref
GeneID:208522
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 441 ESTs, 12 Proteins
pseudo
: _no_value
name
Rab28
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:100972
MGI:1917285
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
Bapx1
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:12020
MGI:108015
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
A230054D04Rik
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:665775
MGI:2444804
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
LOC384308
(CDS detail)
type
gene
link
vega
ensembl
xref
GeneID:384308
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 Proteins
pseudo
: _no_value
name
LOC100040588
(CDS detail)
type
gene
link
vega
ensembl
xref
GeneID:100040588
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 Proteins
pseudo
: _no_value
name
Rab28
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:133892420
GeneID:100972
MGI:1917285
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: RAB28, member RAS oncogene family
transcript_id
: NM_027295.2
name
Bapx1
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:87252734
GeneID:12020
MGI:108015
definition
exception
: unclassified transcription discrepancy
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: bagpipe homeobox gene 1 homolog (Drosophila)
transcript_id
: NM_007524.2
name
A230054D04Rik
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:124487264
GeneID:665775
MGI:2444804
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: RIKEN cDNA A230054D04 gene
transcript_id
: NM_001081422.1
name
Rab28
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:58037191
CCDS:CCDS19258.1
GeneID:100972
MGI:1917285
definition
GO_component
: GO:0016020 - membrane [Evidence IEA]
GO_function
: GO:0005525 - GTP binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]
GO_process
: GO:0007264 - small GTPase mediated signal transduction [Evidence IEA]
codon_start
: 1
product
: RAB28, member RAS oncogene family
protein_id
: NP_081571.1
name
Bapx1
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:6680766
CCDS:CCDS19259.1
GeneID:12020
MGI:108015
definition
GO_component
: GO:0005634 - nucleus [Evidence IEA]; GO:0005667 - transcription factor complex [Evidence IEA]
GO_function
: GO:0003677 - DNA binding [Evidence IEA]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO:0003700 - transcription factor activity [Evidence IEA]
GO_process
: GO:0045449 - regulation of transcription [Evidence IEA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0001501 - skeletal development [Evidence IMP]
codon_start
: 1
exception
: mismatches in translation
note
: homeodomain protein Nkx-3.2; homeobox
product
: bagpipe homeobox gene 1 homolog
protein_id
: NP_031550.1
name
A230054D04Rik
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:124487265
GeneID:665775
MGI:2444804
definition
codon_start
: 1
note
: family with sequence similarity 44, member A
product
: hypothetical protein LOC665775
protein_id
: NP_001074891.1
name
LOC384308
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:384308
definition
number
: 1
pseudo
: _no_value
name
LOC100040588
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:100040588
definition
number
: 1
pseudo
: _no_value
name
LOC100040588
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:100040588
definition
number
: 2
pseudo
: _no_value
name
LOC100040588
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:100040588
definition
number
: 3
pseudo
: _no_value
name
LOC208522
(CDS detail)
type
misc_RNA
link
vega
ensembl
NCBI
xref
GI:149253885
GeneID:208522
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 441 ESTs, 12 Proteins
product
: similar to 60S ribosomal protein L7
pseudo
: _no_value
transcript_id
: XR_032934.1
clone name
MSMg01-534J04
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-081J21
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-082A21
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-359D21
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-443P08
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-479B18
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-539B07
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-499C12
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-143B01
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-139M02
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-407E10
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-236M16
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-539D21
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-467B17
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-151D06
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-415K13
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-401H01
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-497A02
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-474L24
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-183H18
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-109C09
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-434B22
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-118N09
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-191K07
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-536G14
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-427G08
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-418M02
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-300P22
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-095A07
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-091D23
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-066O02
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-351L22
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-118C21
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-498K06
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-408L07
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-167A03
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-317P14
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-384E08
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-461E18
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-058F17
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-061F20
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-539C09
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-489B02
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-521I08
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-288H17
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-339N17
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-396J23
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-148N01
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-512B17
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-489F01
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-235E15
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-272F10
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-513K22
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-125J17
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-399P04
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-347G15
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-304L24
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-061O15
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-499K04
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-452C05
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-301B02
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-076P03
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-046L20
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-429J05
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-454A08
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-263A13
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-422O13
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-108F14
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-522C22
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-386P14
singlet/doublet
doublet
plural/unique
plural
clone name
MSMg01-175K03
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-066A16
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-351O24
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-298N15
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-459K11
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-078E24
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-078D24
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-532B16
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-387P12
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-535F21
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-275N07
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-419M07
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-491H07
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-507J12
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-527J13
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-520M09
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-095G15
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-299C23
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-375N01
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-436L03
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-375E11
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-536C18
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-290P06
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-474L12
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-296P01
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-533G13
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-088E06
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-370M13
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-497C20
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-292G18
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-322O11
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-462D19
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-141A13
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-065F19
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-513I15
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-521E08
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-450F06
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-358M23
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-440I12
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-385K04
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-407D06
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-311H05
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-290N01
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-367O01
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-342N12
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-511I13
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-096P06
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-151G12
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-091N19
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-112M10
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-182I10
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-094F12
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-058H17
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-124O12
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-266K13
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-027G06
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-163P10
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-165O19
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-325C16
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-202N10
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-071O18
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-327C05
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-332J21
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-281F11
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-255C10
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-118P02
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-144N01
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-008O12
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-343C02
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-339J09
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-326D03
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-048P18
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-342D22
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-075F07
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-015J14
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-197J01
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-075G07
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-265B14
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-003D08
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-333G23
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-144D20
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-166L04
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-161O02
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-046G24
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-280M07
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-252J16
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-246O06
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-055E14
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-163B04
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-146F18
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-196H19
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-314L14
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-166M06
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-335L06
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-202A02
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-232A04
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-330P23
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-231O19
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-192H07
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-339P09
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-118M06
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-037L03
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-163H04
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-026G09
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-159J02
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-292P07
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-120P14
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-232F08
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-091C17
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-309G04
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-043C18
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-214A07
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-250A01
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-267P23
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-337M07
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-125P09
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-011H21
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-293M05
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-152O02
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-276I10
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-348M23
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-317M24
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-047B06
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-062N08
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-349J05
singlet/doublet
singlet
plural/unique
unique