Query= MSMg01no066_c19.b1 MSMg01no066_c19.b1 CHROMAT_FILE:
MSMg01no066_c19.b1 PHD_FILE: MSMg01no066_c19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:11:53 2005
(402 letters)
>mm_chr5_19457969_19458769
Length = 801
Score = 630 bits (326), Expect = 0.0
Identities = 381/402 (94%), Gaps = 9/402 (2%)
Strand = Plus / Minus
Query: 5 gaattccactga---tttcattaatagcccaaatgctacatatttcctctgctaacaacc 61
|||||||||||| || ||||||||||||||||||||||||||||| ||| |||||||
Sbjct: 601 gaattccactgaagctt--attaatagcccaaatgctacatatttcctttgcaaacaacc 544
Query: 62 tcaaaatcttcgccttatactccagcacccctggcccaaaaaaaaaaaaaaaaaaagcct 121
||||||||||| |||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct: 543 tcaaaatcttccccttatactccagcacccctggtcaaaaaaaaaaaaaaaaaaaagcct 484
Query: 122 tcatgttttctttatattttcaaaaggcagccatttttctcaatgaggataaggaaaaaa 181
|| |||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||
Sbjct: 483 tc-tgttttctttatattttcaaaaggcagccaattttctcaatgaggaaaaggaaaaaa 425
Query: 182 a-aagttccttaaaatagctctccacgctgttctataatccgttttttacccccctttaa 240
| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 424 agaagttccttaaaatagctctccacgctgttctataatccgttttt--cccccctttaa 367
Query: 241 aggcaatctctgaatcgtaagacacttcttcctttaagtgaatcagcctgctgttgtaac 300
|| ||| ||| |||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 agccaacctcccaatcataagacacttcttcctttaagtgaatcagcctgctgttgtaac 307
Query: 301 cttttctatgtgggatgtttttcagtacttacaaataagactgtatttctagggaataag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 cttttctatgtgggatgtttttcagtacttacaaataagactgtatttctagggaataag 247
Query: 361 aggaataaaaggaagaattagttcaggtaaacatgacattag 402
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 aggaataaaaggaagaattagttcaggtaaacatgacattag 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 5
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 402
Length of database: 801
Length adjustment: 9
Effective length of query: 393
Effective length of database: 792
Effective search space: 311256
Effective search space used: 311256
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no066_c19.g1 MSMg01no066_c19.g1 CHROMAT_FILE:
MSMg01no066_c19.g1 PHD_FILE: MSMg01no066_c19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:11:53 2005
(432 letters)
>mm_chr5_19316266_19317094
Length = 829
Score = 812 bits (420), Expect = 0.0
Identities = 428/432 (99%), Gaps = 3/432 (0%)
Strand = Plus / Plus
Query: 1 atttagacactacacatttgtgaaggacagaactgtcacatggaagttgtcttctagcgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atttagacactacacatttgtgaaggacagaactgtcacatggaagttgtcttctagcgt 260
Query: 61 ccacgtacatgcctgcacaagtacatacacatacacagtaatttcaaaaatgtttgatga 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccacgtacatgcctgcacaagtacatacacatacacagtaatttcaaaaatgtttga--- 317
Query: 121 ctggataagaagagcctgttttaccagcacttagccaaggttaatagttgaagaaataga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 ctggataagaagagcctgttttaccagcacttagccaaggttaatagttgaagaaataga 377
Query: 181 tcttcttaataccttgacatggtttttttcacactgtgtattgctgcaataccccaataa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 tcttcttaataccttgacatggtttttttcacactgtgtattgctgcaataccccaataa 437
Query: 241 ctatgcagaaatggtcacagtaataataactcaaaatgtatacaacatgtccaaatctcc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 ctatgcagaaatggtcacagtaataataactcaaaatgtatacaacatgtccaaatctcc 497
Query: 301 aagtccaaatatttgtggagttttaatttggagatttgtggttgcttaaaccagaatatt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 aagtccaaatatttgtggagttttaatttggagatttgtggttgcttaaaccagaatatt 557
Query: 361 tcctaatttagtaaaattatgttaagaaggagctgccagaagaacagagccagtcgtgta 420
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 558 tcctaatttagtaaaattatgttaagaaggagctgccagaagaacagagacagtcgtgta 617
Query: 421 tatttatagtat 432
||||||||||||
Sbjct: 618 tatttatagtat 629
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 432
Length of database: 829
Length adjustment: 9
Effective length of query: 423
Effective length of database: 820
Effective search space: 346860
Effective search space used: 346860
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
