Query= MSMg01no066_h01.b1 MSMg01no066_h01.b1 CHROMAT_FILE:
MSMg01no066_h01.b1 PHD_FILE: MSMg01no066_h01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:12:14 2005
(492 letters)
>mm_chr5_105639119_105640011
Length = 893
Score = 915 bits (473), Expect = 0.0
Identities = 485/489 (99%), Gaps = 1/489 (0%)
Strand = Plus / Plus
Query: 5 gaattccaaaggcaatgccggaaaagtctccatatgcataaaataaaaaaaaatctaaat 64
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccaaaggcaatgcaggaaaagtctccatatgcataaaataaaaaaaaatctaaat 264
Query: 65 aatgttttaaaaagaaatcacttgtgtgacttcactgaagaaaaaatgtgttctgatatt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aatgttttaaaaagaaatcacttgtgtgacttcactgaagaaaaaatgtgttctgatatt 324
Query: 125 ttt-gagttaatgctatttcattaaagatggggaccttcatacatgtggagatacaggat 183
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ttttgagttaatgctatttcattaaagatggggaccttcatacatgtggagatacaggat 384
Query: 184 gcgaccaacattctgagaagttgtaagcatgaacagatatttcaatatggcataccaatt 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gcgaccaacattctgagaagttgtaagcatgaacagatatttcaatatggcataccaatt 444
Query: 244 gtggtgattttatccttaggctaatggatttgaatgcttggttcccagttggtagaactg 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gtggtgattttatccttaggctaatggatttgaatgcttggttcccagttggtagaactg 504
Query: 304 gttggcaaggattagggggtgtgtccttgttggagttggtgtcactggggtgggctttga 363
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gttgggaaggattagggggtgtgtccttgttggagttggtgtcactggggtgggctttga 564
Query: 364 gatttcaaaagactcacattcccatatagctctttctgtctgtcttgtgcttttagatca 423
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 565 gatttcaaaagactcacattcccatatagctctttctgtctgccttgtgcttttagatca 624
Query: 424 gagatgagtgagatctcagttactgctccagggcatgcctgctcgcctgtgcacatgttt 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gagatgagtgagatctcagttactgctccagggcatgcctgctcgcctgtgcacatgttt 684
Query: 484 cctgccatc 492
|||||||||
Sbjct: 685 cctgccatc 693
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 492
Length of database: 893
Length adjustment: 10
Effective length of query: 482
Effective length of database: 883
Effective search space: 425606
Effective search space used: 425606
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no066_h01.g1 MSMg01no066_h01.g1 CHROMAT_FILE:
MSMg01no066_h01.g1 PHD_FILE: MSMg01no066_h01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:12:14 2005
(555 letters)
>mm_chr5_105874646_105875600
Length = 955
Score = 731 bits (378), Expect = 0.0
Identities = 436/464 (93%), Gaps = 18/464 (3%)
Strand = Plus / Minus
Query: 97 tagatgcagagaaagtatggtctccaggctagcctgggctacataggaagaccctgtctg 156
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 955 tagatgcagagaaagtatggtctccaggctagcctgggctacataggaagaccctgtctg 896
Query: 157 aaagaacaaacaacatccactctaaacaaatgtgttatagaatgcacacacacacacaca 216
|||||||||||||||||||||| ||||||||||||||||||||| ||||||||
Sbjct: 895 aaagaacaaacaacatccactccaaacaaatgtgttatagaatg--------cacacaca 844
Query: 217 cacacacacacacacaccccacatacatacagattgagagacagagacagagag----ag 272
||||||||||||||||||||||| ||| |||||||||||||||||||||||||| ||
Sbjct: 843 cacacacacacacacaccccacacacacacagattgagagacagagacagagagaggaag 784
Query: 273 agaggaagagaggaaaagagaaagagagaaagtacctcagagtaactgctgtttggctgc 332
|||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct: 783 agaggaagagaggaaaagagaa----agaaagtaccttagagtaactgctgtttggctgc 728
Query: 333 ctggctagaagcacccagaagcatgacttttctctaaccatgctgactagcttgtgttct 392
||| |||||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct: 727 ctgactagaagcacccagaaacatgacttctctctaaccatgctgactagcttgtgttct 668
Query: 393 caactccgggtcataggcatacttaatccatcgacaagaagagcaaggagcacattacga 452
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct: 667 caactccgggtcataggcatacttaatccatcgacatgaagagcaaggagcacattagga 608
Query: 453 gact-agtgctgtctttatgttatcagggtccttctgttgatcacccccagagtacttgg 511
|| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607 ga-taagtgctgtctttatgttatcagggtccttctgttgatcacccccagagtacttgg 549
Query: 512 gcagagtaatttgaagaattgtgttcattttcctttgctgcaca 555
||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 548 gcagagtaatttgaagaattgtgctcattttcctttgctgcaca 505
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 555
Length of database: 955
Length adjustment: 10
Effective length of query: 545
Effective length of database: 945
Effective search space: 515025
Effective search space used: 515025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
