BAC Information

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BAC

Clone NameMSMg01-066H14
Chromosome5 (Build37)
Map Location 151,962,465 - 151,962,825
singlet/doubletsinglet
Overlap geneStard13
Upstream geneLOC667470, Fry, LOC100042068, Gm5, XM_359419, Brca2, B230342M21Rik, BC037393, Aprin, LOC100040180, Kl, LOC667510
Downstream geneLOC630708, LOC625175, LOC100042166, EG435877, EG632649, EG632671, Rfc3
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-066H14.T7 (MSMg01no066_h14.b1)MSMg01-066H14.TJ (MSMg01no066_h14.g1)
ACCAG291438AG291439
length754961
length of high quality
(start - end)
361 (134 - 494)---
definitionCHROMAT_FILE: MSMg01no066_h14.b1 PHD_FILE: MSMg01no066_h14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:12:16 2005CHROMAT_FILE: MSMg01no066_h14.g1 PHD_FILE: MSMg01no066_h14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:12:17 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCTGTTCCTTTTTTTTCCCTTTTCTTTTTTCCCTNCCCTCACCCCCTCTA
TANNNANACGATGATAGGGGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAATCCATTTGAGATGAAT
GAACCCAAGAAAGCACCAGGCAGATTTGAAACTAACGTACATCACCATTA
AAAGTGATTTTGTAGTCACTTTACAGGAACATAATTTATGATCCTTGAAA
AAGATTTTACTCTTTCTGTGTAAGAATTGTGATCATTAGTGTCATAATGA
GAGTCATAGATTATGAAGGAGAAGATTGGTTCCTATGAGCAGATTTTTCT
AGCCTTTTCAATTCCACTAGAGAGGTCTTCAGAAACAAAGTACTAGGATC
GAATTGAAGGTTAAACATCTTGGGGAATTTGCATTTAACAAGAAAGATCA
TTGCTGTGAATATATTTTCCAATTTGTAACAGCTGAGGCTCATAAGTGAA
GATTGCTATGGCGCAGAGCAACCGACTGGTTACAAGCATGTGTTGGCAAG
AGCCCATTGGCTATTTACAATATAATTATAACTCATTATTGTCTTCCAGC
TGCTTCACCTAATTATTTCCTTACCAATGTGACAAGGTTCCTGATCTTTA
GTGGACCCACCCCCCCTTTCTATCATTTTCTTTGCGCCAAATAAAATTTC
CTTCCCAGTGTAAATTTTTCCCCTTGATGGCGTCTTCTTTCAGCTCTTGG
CCGC
CTTCCCCCCCCCCCCCCCCCTCCTACCCCCGCCCTCCCCACTTTNNATTA
CATNACCCCTCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCTGAG
GATGCGCGGAATTCTTTTTCTTTCCGTAAGAGAGTGAGGGGGGGCTGATT
ATATTCTAGCTATATTGGATTCATACTTGCTATAATTATCCTTCAACTCA
CTGATTTTGATAAGAGCTTCTTCCAGAGCAGAGATTCTGATATTATATGA
CTCGTATTCTCTAGTCCCATCATTTATCATATTCATTATACTATCTCCTC
TCTTCGTTCTACTATCTTTCCCCCTCCACACCTGTTTTCCCCTTACTTTC
CTCTATACTTTTATCTTTTGTTCCGCCTTCCCCACTTTATTCTGTGCTTC
TTTGCTTTTCGTTTCTTTTTCTTCCCCTCACATCTCCGTTTCTTTCATCT
ACCCCTTTCTTTTCCCTTTCTCCATTCCCCACTCACCTTATTTTTCTTTT
ATTCGTTACTTTTCCGCCTCCGCGTCCCTTTTCAATCATTTTTCCCTCTA
ACTTTCTCCACTACCTTACTTGTTTGTATCTTATTTCACACATACTACTT
CTTCTTACTATTAACTTATCACCTATTTTTTCCCCTATGTTATTTGTCCC
CGTACTTCTCCTCTTCCTCCTTGTTCTTTCGTTCACTCACTATTTCGCCA
CCCCTTATTTTACCCTCCTTTTTTACTATATTCCCTACATCTTATTATTC
TATATATTATTTAATCTACTCACATATACACTTCTTGTAAATTTGATATA
CATATTCGCAACCTCCTATTATATACACACACATCTTTCACAATCTCTCA
TATTATATTTAGTTACACTTCATCTCACCACTATAATCACCATACCAATG
CATCTCATAAACTATTTACACACATTATTACACCANCTTTCTTCCTCTTT
CTCTATGTCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no066_h14.b1 MSMg01no066_h14.b1 CHROMAT_FILE:
MSMg01no066_h14.b1 PHD_FILE: MSMg01no066_h14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:12:16 2005
         (361 letters)



>mm_chr5_151962265_151963025
          Length = 761

 Score =  659 bits (341), Expect = 0.0
 Identities = 356/361 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   atccatttgagatgaatgaacccaagaaagcaccaggcagatttgaaactaacgtacatc 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 201 atccatttgagatgaatgaacccaagaaagcaccaggcagatttgaaactaatgtacatc 260

                                                                       
Query: 61  accattaaaagtgattttgtagtcactttacaggaacataatttatgatccttgaaaaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 accattaaaagtgattttgtagtcactttacaggaacataatttatgatccttgaaaaag 320

                                                                       
Query: 121 attttactctttctgtgtaagaattgtgatcattagtgtcataatgagagtcatagatta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 attttactctttctgtgtaagaattgtgatcattagtgtcataatgagagtcatagatta 380

                                                                       
Query: 181 tgaaggagaagattggttcctatgagcagatttttctagccttttcaattccactagaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgaaggagaagattggttcctatgagcagatttttctagccttttcaattccactagaga 440

                                                                       
Query: 241 ggtcttcagaaacaaagtactaggatcgaattgaaggttaaacatcttggggaatttgca 300
           || |  ||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 441 gggcaacagaaacaaagtactaggaccgaattgaaggttaaacatcttggggaatttgca 500

                                                                       
Query: 301 tttaacaagaaagatcattgctgtgaatatattttccaatttgtaacagctgaggctcat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tttaacaagaaagatcattgctgtgaatatattttccaatttgtaacagctgaggctcat 560

            
Query: 361 a 361
           |
Sbjct: 561 a 561


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 361
Length of database: 761
Length adjustment: 9
Effective length of query: 352
Effective length of database: 752
Effective search space:   264704
Effective search space used:   264704
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)