NNCTCTATAATTGCGGCGCTAAACGACTCATATATGCAGAGGATCCGCGG
AATTCTGTTTAGCTCTCGTTCACCATTTTTTAATAGGGTTATTTGGTTCT
CTGGATTCTAGCTTCTTGAGTTCTTTGTATATATTAGATGTTAGTCCTCT
ATTGGATGTAGGATTAGTAAAGATCTTTTCCCAGTCTATTGGTTCCATTA
TTTCTTAGCAAAGCTCTTATCTCTCCTTGCTGCTTACTCTCTAGTCATTC
TTATATTCTTAGGATTTTAGAGAGGTCCCAAGACTCCCATTAATTATCTA
TTTCTATTATTCCAACTGATGGTTTAATTTTTGTTATGTATTCAAGCTTC
ATAAATCATTCTTTAGCAATCCCTCATGTATTGGTAAATCAGACTAAATA
AAGATGACTTCATACAATTAAAACATTTTTAATTAAACTATAATTACATC
ACTTTCCCCTGCTCTTTTGCCCCTCAAACTCCTCCCATGTCTCTGTACTC
CAGCTTTTTTCTATGTTCCCTCATTTCCTCTAAAATTGATGACCACTTTT
CTTTTACTTATTACCCAACACAGAGAGGGCGGGGGAGAGGTAGAGATATA
CACATGAACACAATTTTATAAATAAAACTTGGTTCAGTATGATTTGGTTG
TTTGTGGTGAATATGACTTCAGTCACTATGTACTGGATAATCAGTTAGG

CCCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCACCTGCCTCTACCTCCCAAGTGCT
GGGATTAAAGGCGTATTCCACCACCACTGCCCAGCTCAGCATCCTTTCTT
ACAGTACCCAGGCCCACCAGCCTAGAGGTGATGGTTTCCATAATGGACTG
GGCTTTCCAACATCAATCACTTAATTAAGAAATTATTAAGAAAATCCCTA
CAAGGTTTGCCTCCAGCTCAATCTTTCTTCTTAAGGCTCTTTTTTCTATT
ATTGGATTATTTTCTTTCTTTACATTTCAAATGTTTTCCCCTTGCCAGGT
CTCCCCTTGGGAACCTCCCCTATTTCCTCTCCCCTGCCTCTATGAGAGTG
CACCCACTCCTGTCTTCCTGCCCTGGCATTCCCCTACATGGGGCATTGAA
CACCCTCAGACCCAAGGGCCTTTCCTCCCACTAATGTCTAACAAGGCCAT
CCTCTGCCACATATGTGACCAACACCATGGGTCCCTCAATGTGTATTCTT
TGGTTGGTGATCCAGTCTTTGGGAGCTCCAGGGGGACTGTACAGCCCAAT
CTTATAAAGGTATTTTCTCAGTTAAAGTTCCCTCCTCTAAGAGGACTGTA
GTTTGTATGAAATTGATAGAGAAGAAAGAAGAAGAAGAAGAAGAAGAAGA
T

Query= MSMg01no066_n05.b1 MSMg01no066_n05.b1 CHROMAT_FILE:
MSMg01no066_n05.b1 PHD_FILE: MSMg01no066_n05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:12:45 2005
         (531 letters)



>mm_chr5_48906402_48907333
          Length = 932

 Score =  922 bits (477), Expect = 0.0
 Identities = 518/533 (97%), Gaps = 6/533 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   caccattttttaatagggttatttggttctctggattctagcttcttgagttctttgtat 60
           ||||||||||||||||||||||||||||||||||| || ||||||||||||||||| |||
Sbjct: 692 caccattttttaatagggttatttggttctctggagtccagcttcttgagttctttatat 633

                                                                       
Query: 61  atattagatgttagtcctctattggatgtaggattagtaaagatcttttcccagtctatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 632 atattagatgttagtcctctattggatgtaggattagtaaagatcttttcccagtctatt 573

                                                                       
Query: 121 ggttccattatttcttagcaaagctcttatctctccttgctgcttactctctagtcattc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 572 ggttccattatttcttagcaaagctcttatctctccttgctgcttactctctagtcattc 513

                                                                       
Query: 181 ttatattcttaggattttagagaggtcccaagactcccattaattatctatttctattat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 ttatattcttaggattttagagaggtcccaagactcccattaattatctatttctattat 453

                                                                       
Query: 241 tccaactgatggtttaa-tttttgttatgtattcaagcttcataaatcattctttagcaa 299
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 tccaactgatggtttaattttttgttatgtattcaagcttcataaatcattctttagcaa 393

                                                                       
Query: 300 tccctcatgtattggtaaatcagactaaataaagatgacttcatacaattaaaaca---t 356
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||   |
Sbjct: 392 tccctcatgtattggtaaatcagactaaataaagatgacttcgtacaattaaaacatttt 333

                                                                       
Query: 357 ttttaattaaactataat-tacatcactttcccctgctcttttgcccctcaaactcctcc 415
           ||||||||||||||| || ||||||| ||| ||||||||||| |||||||||||||||||
Sbjct: 332 ttttaattaaactat-atctacatcatttttccctgctctttcgcccctcaaactcctcc 274

                                                                       
Query: 416 catgtctctgtactccagcttttttctatgttccctcatttcctctaaaattgatgacca 475
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 catgtctctgtactccagcatttttctatgttccctcatttcctctaaaattgatgacca 214

                                                                
Query: 476 cttttcttttacttattacccaacacagagagggcgggggagaggtagagata 528
           ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 213 cttttcttttacttattacccaacacagagagggcaggggagaggtagagata 161


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 531
Length of database: 932
Length adjustment: 10
Effective length of query: 521
Effective length of database: 922
Effective search space:   480362
Effective search space used:   480362
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)