BAC Information

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BAC

Clone NameMSMg01-066P06
Chromosome5 (Build37)
Map Location 36,717,518 - 36,717,740
singlet/doubletsinglet
Overlap geneSorcs2
Upstream geneHmx1, Cpz, Plk-ps1, 2310079F23Rik, Acox3, Htra3, Sh3tc1, Ablim2, Afap1, LOC100040209, 2310020A21Rik
Downstream geneGrpel1, Ccdc96, Tbc1d14, D5Ertd579e, LOC100040278, LOC100040825, Cno, Mrfap1, Man2b2, Ppp2r2c, Wfs1, Jakmip1, EG330070, Gm1043, LOC100040936, Crmp1, Evc
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-066P06.T7 (MSMg01no066_p06.b1)MSMg01-066P06.TJ (MSMg01no066_p06.g1)
ACCAG291805AG291806
length769806
length of high quality
(start - end)
222 (128 - 349)51 (133 - 183)
definitionCHROMAT_FILE: MSMg01no066_p06.b1 PHD_FILE: MSMg01no066_p06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:12:55 2005CHROMAT_FILE: MSMg01no066_p06.g1 PHD_FILE: MSMg01no066_p06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:12:55 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCTTTTTCCCTTTTTCCCTTTCTCCTCTTCTTTCTTTTTTTTCTTATCTT
TCTAATATCAATATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCAGGTGCGAGTCACAATGTGGGC
ACGAGCTTCACAGTCTGCTTCAGAGGGAGCCGTGTTTCGTCTCCCCAGTG
GGACACACGCATCCCAGCCTCTGGCTCTGAAACACTCCCACCCCAGCCAT
CCTAACTGCTCAAGAGCCTCCAGGTCGTTATCTAGATTTTTTTTTAAAGA
ATTTTTTTAAACTTATTTTATGTATGAGTACACTGTAGCTGTCTTCAGAC
TCACCATACTAGGGTATCAGATCTCATTCCAGATGGTTGTGAGCCATCAT
GTGGTTGCTGGGAATTGAACTCATGACCTCTGGAAGAGAAGTCAGTGCTC
TTAACCGCTGAGCCATCTCTCCAGTTCTATCTAGATTTTTTTGTAACACA
TCTTCTTACTGGATATTTTATGTCTTTGTCCGCTAGGTTTGCGTTTTCTC
TACTCTTTCAGTGGACCATTGTTCTCTGCAGAGTTCGCGATTTGGTTCTG
ATTCTGCTTGCTTATTCTTTCGCCCTTACTTTTTTGTTAATGTGTTTTAT
TAATGTTTGCTTTTTACCTACCTTCTTTTCCTTGTTTGTTCTATCCGGCC
CTTTCCACTTTCCCTTTAAACTTGTTTTTTTTTTCTCTCCGTCCTTTTTT
TTTGTCCTTTCCTCCCCCC
CCCCCCCCCCCCCNCCCCCCCCNCCCCCCCCACCNCCCCCCCCCANCNCA
ATCTCCCCTCCTCTATAATTGCGGCGCTAAACGACTCCTATAGTCCGAGA
ATACGCGGAATTCATTTCCCAGTACCCGGAGCACTTTTGTGTGCCTGGTG
CTGTTCTTTGTTTTGCGTGGCTGCCTTTTTCAGGCTGCACAGTAATAGGA
GTGGCGTGAGGTGGGACTCGCCGCTGCCTGCTGATCCATTGGGCTGCTTT
CCTTCTAGCTGCTTTCCTGGACTTTATTAGCTGCCGAGCATTAATTCTGT
CCCTAGCCTCTTGCTGCCATAGTTTTGGATATGACTTATGACCCCGCCCC
CCCCCCATAGCGGGAGGCCTGACGTTCACTTGTCGCGCCCGCTGCTTTCC
TCCTCCTTGTTGCTTCCTGTCACCTACCGATGCCAGATATCTGTTTGGCC
TTCCTGCATCGGTCGCTTGTGTCTTGTTCCGCTTCTTCCCGCGTCCTCGA
TAATTCTCTTTTCATGACAAGTTCAGCCTCTGAGACTTCCATCCCTATTG
CCCTTGTTTTTTTTACCTCTCCGCTGTCCTCTTTTGTATCCTTCTTTTTA
TATTCGCTCTTATTCTACACTTTTTCTTTTTCCACCCTATATTCTAGATA
TTTTACCTAATTCATACAAAACCTGATTCCTTAATATCACATCGCTTTCC
ATTTTCATTTCCTACACTTTCTATTTTCATCTACCCTACTATACTATTAT
TTCCTACTCTTGTTTATAACTTTTCCCTTTTTGCCCTAATTCATTATTAT
ATTATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no066_p06.b1 MSMg01no066_p06.b1 CHROMAT_FILE:
MSMg01no066_p06.b1 PHD_FILE: MSMg01no066_p06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:12:55 2005
         (222 letters)



>mm_chr5_36717318_36717939
          Length = 622

 Score =  424 bits (219), Expect = e-123
 Identities = 222/223 (99%), Gaps = 1/223 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   caggtgcgagtcacaatgtgggcacgagcttcacagtctgcttcagagggagccgtgttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caggtgcgagtcacaatgtgggcacgagcttcacagtctgcttcagagggagccgtgttt 260

                                                                       
Query: 61  cgtctccccagtgggacacacgcatcccagcctctggctctgaaacactcccaccccagc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cgtctccccagtgggacacacgcatcccagcctctggctctgaaacactcccaccccagc 320

                                                                       
Query: 121 catcctaactgctcaagagcctccaggtcgttatctagattttttttt-aaagaattttt 179
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 321 catcctaactgctcaagagcctccaggtcgttatctagattttttttttaaagaattttt 380

                                                      
Query: 180 ttaaacttattttatgtatgagtacactgtagctgtcttcaga 222
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttaaacttattttatgtatgagtacactgtagctgtcttcaga 423


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 222
Length of database: 622
Length adjustment: 9
Effective length of query: 213
Effective length of database: 613
Effective search space:   130569
Effective search space used:   130569
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)