Query= MSMg01no067_c03.b1 MSMg01no067_c03.b1 CHROMAT_FILE:
MSMg01no067_c03.b1 PHD_FILE: MSMg01no067_c03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:13:09 2005
(323 letters)
>mm_chr5_52498439_52499162
Length = 724
Score = 590 bits (305), Expect = e-173
Identities = 317/321 (98%), Gaps = 1/321 (0%)
Strand = Plus / Plus
Query: 4 ggaattcaataaacgttgctttaaaaaag-taattatttgttacaataaccagctactcg 62
|||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcaataaacgttgttttaaaaaagctaattatttgttacaataaccagctactcg 263
Query: 63 cgccactttgtatttgcaggtttgtaaactacttccatttgaaacgtaattgattccatt 122
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 cgccactttgtatttggaggtttgtaaactacttccatttgaaacgtaattgattccatt 323
Query: 123 tttatcatttgttcaagtttatgtggttgttctcctcctaagagatgataacatctattt 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tttatcatttgttcaagtttatgtggttgttctcctcctaagagatgataacatctattt 383
Query: 183 tcagcaaattatacattataattcctcattcaaaagctgtaacggaaaacagaatgctaa 242
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 384 tcagcaaattatacattataattcctcattcaaaagctgtaacggaaaacaaaatgctaa 443
Query: 243 tttatgctgtaaacgaaactacggaatcataatcactcattgttaacattagggacaaac 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tttatgctgtaaacgaaactacggaatcataatcactcattgttaacattagggacaaac 503
Query: 303 cgctactggaaataataaatt 323
|||||||||||||||||||||
Sbjct: 504 cgctactggaaataataaatt 524
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 323
Length of database: 724
Length adjustment: 9
Effective length of query: 314
Effective length of database: 715
Effective search space: 224510
Effective search space used: 224510
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no067_c03.g1 MSMg01no067_c03.g1 CHROMAT_FILE:
MSMg01no067_c03.g1 PHD_FILE: MSMg01no067_c03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:13:09 2005
(289 letters)
>mm_chr5_52638694_52639382
Length = 689
Score = 513 bits (265), Expect = e-150
Identities = 283/289 (97%)
Strand = Plus / Minus
Query: 1 ataaatacccccagttctgttgtggcttgttgcctgcatttatactgaaccgaaatgcta 60
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 583 ataaatacccccagttctgttgtggcttgttgcctgcatttatactgaaaggaaatgcta 524
Query: 61 aatttcagttaacggctagcagaaacaaagatatgggggttttctgtacggattgtcccc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 aatttcagttaacggctagcagaaacaaagatatgggggttttctgtacggattgtcccc 464
Query: 121 ccctccggcttgcggaagattacgtcaagccctgaagctccaagcatctcccccatgccc 180
||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||
Sbjct: 463 ccctccggcttgcggaagattacatcaagccctgaagctccaagcgtctcccccatgccc 404
Query: 181 tcctctcagcacagtagccatgctccgaccttagaaaagcaagatgaggtgcaggctggc 240
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 403 tcctctcagcacagtagccatgctctgaccttagaaaagcaagatgaggtgcaggctggc 344
Query: 241 ccaaggtgaacttcaggcagggggactgaaggtaaagtgttatgcacat 289
|||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 ccaaggtggacttcaggcagggggactgaaggtaaagtgttatgcacat 295
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space: 190400
Effective search space used: 190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
