BAC Information

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BAC

Clone NameMSMg01-067E12
Chromosome5 (Build37)
Map Location 15,380,038 - 15,478,177
singlet/doubletdoublet
Overlap gene4930519H02Rik, LOC100041781, Cacna2d1
Upstream genePclo, ENSMUSG00000033219, LOC624245, Speer8-ps1, Speer4c, Speer4d, 4930572O03Rik, Speer7-ps1
Downstream geneLOC668121, Hgf, EG668131
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-067E12.T7 (MSMg01no067_e12.b1)MSMg01-067E12.TJ (MSMg01no067_e12.g1)
ACCAG292054AG292055
length700704
length of high quality
(start - end)
308 (43 - 350)187 (72 - 258)
definitionCHROMAT_FILE: MSMg01no067_e12.b1 PHD_FILE: MSMg01no067_e12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:13:20 2005CHROMAT_FILE: MSMg01no067_e12.g1 PHD_FILE: MSMg01no067_e12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:13:20 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(15,380,038 - 15,380,341)(15,477,991 - 15,478,177)
sequence
AGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTATTGAGTTATTTAGAGCATTGTGCTCAGTTGGAGAATTCTGGGTGTA
CTCTCATACTAAGCTGCTCTGTGTGCGGAGGTTTGGAGCATAGGTGGGGA
GTGCCTATTGCTCCATAATACACAACATTTCCATGTTCAAATCTGAATTC
CCCCCTCTTCCTCTTTTTGTCAGGATTGTATAATGAACTTCCACAGCTTG
AGCTACCTGTTGGCATCCTTAGTTCACTTTTGTCTTCCATAAAGTTGGGG
AAGCATTTAGTCTTCCTGCTGATACCTTGCGTTTCAGTCCTGCTTATGAA
TTTTTTGTTCTCCCCCCCTCCCACTCCTCTTGGTTTTATTTTCTGGCATT
GGTGGGTTTGAGCTCACAACAAACATCTAAACTGTTGATGTAAGCATGTT
TAATGTACTGCCTCAGCTTTTTTGAAACCATAATCTATTATCTGACTGAA
ATGGTTTACTATCATTATCAACAAAATTCCAACATATCATATTAGAGGAT
CTTAATATTTTTATCCTTTCTGATTCTCTTCGTAGATTGCAGTTTATTCA
TATTTTGCGTTCTTCAGATCTACTGTACTTCACACCTAGAGATGGCACTT
CTTAATTTATGGTTACCAATGTATTATAATGTTTATCTATTTACATTCCG

ATACAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTTGCATCAGCTAAGGTCAACTCTAACTGC
CTTCTCTCTTAATAAGCCTGCACGATTTAAACAGCATTCAGTTATTTGGG
ATTAAATTTAGGTTTGTTGTTTACAGACTTGTTTTATTTAATACATTAAA
AAATGTTTACCTAATGCAAAACCCCAAATAGACACTTGGGTTGGTTTTCC
AAGTAACCCGATAGATAACTCAGTAGTACTGATTTCTCAAATGAAGCATA
GGACAGCAGTTCATGTTGTCCAGCTCTCACTAATGTACTCAGTCAGCAGT
AGGGTCTCTGACGCCTTATAACTCAGTGAGCTGTCCATTGATACTCCGGC
CTAGGTTTCCCCATCTGCTGCTGTCACTCATCTAGGATATTACATTTACC
ATGGTCATTTTTTGCCTTTTTTACTTACAAGAACCCACGAGCTTTCTCTT
TACTTTCCTTGATTTACCTGATTTCCAATCACTCTCCTTTCCACTAGGCA
TAGCTTTTACATCTACTAATCACTATTCTTTTACTGCCATAGCTCATTCT
GATGATGTTCGGCCTTGATGACCGGAACCCTGCTACCTGTCCCTTACTCC
TATCTTTCACACTAATCTGACCTTTCTCTCCCTTTTCTTTGTTCCTCTTC
CCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no067_e12.b1 MSMg01no067_e12.b1 CHROMAT_FILE:
MSMg01no067_e12.b1 PHD_FILE: MSMg01no067_e12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:13:20 2005
         (308 letters)



>mm_chr5_15379834_15380541
          Length = 708

 Score =  565 bits (292), Expect = e-165
 Identities = 301/304 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctattgagttatttagagcattgtgctcagttggagaattctgggtgtactctca 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctattgagttatttagagcattgtgctcagttggagaattctgggtgtactctca 264

                                                                       
Query: 65  tactaagctgctctgtgtgcggaggtttggagcataggtggggagtgcctattgctccat 124
           |||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct: 265 tactaagctgctctgtgtgcggaggtttggagcagaggtgtggagtgcctattgctccat 324

                                                                       
Query: 125 aatacacaacatttccatgttcaaatctgaattcccccctcttcctctttttgtcaggat 184
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aatacacgacatttccatgttcaaatctgaattcccccctcttcctctttttgtcaggat 384

                                                                       
Query: 185 tgtataatgaacttccacagcttgagctacctgttggcatccttagttcacttttgtctt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tgtataatgaacttccacagcttgagctacctgttggcatccttagttcacttttgtctt 444

                                                                       
Query: 245 ccataaagttggggaagcatttagtcttcctgctgataccttgcgtttcagtcctgctta 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ccataaagttggggaagcatttagtcttcctgctgataccttgcgtttcagtcctgctta 504

               
Query: 305 tgaa 308
           ||||
Sbjct: 505 tgaa 508


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 308
Length of database: 708
Length adjustment: 9
Effective length of query: 299
Effective length of database: 699
Effective search space:   209001
Effective search space used:   209001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no067_e12.g1 MSMg01no067_e12.g1 CHROMAT_FILE:
MSMg01no067_e12.g1 PHD_FILE: MSMg01no067_e12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:13:20 2005
         (187 letters)



>mm_chr5_15477791_15478377
          Length = 587

 Score =  315 bits (163), Expect = 9e-91
 Identities = 181/187 (96%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttgcatcagctaaggtcaactctaactgccttctctcttaataagcctgcacgatttaaa 60
           ||||||||||||||||||| |||||||||||||||||||||| ||  |||||||||||||
Sbjct: 387 ttgcatcagctaaggtcaattctaactgccttctctcttaatcagggtgcacgatttaaa 328

                                                                       
Query: 61  cagcattcagttatttgggattaaatttaggtttgttgtttacagacttgttttatttaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 cagcattcagttatttgggattaaatttaggtttgttgtttacagacttgttttatttaa 268

                                                                       
Query: 121 tacattaaaaaatgtttacctaatgcaaaaccccaaatagacacttgggttggttttcca 180
           ||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||
Sbjct: 267 tacattaaaaaatgtttacctaaagcaaaaccccaaagagacacttgggttggttttcca 208

                  
Query: 181 agtaacc 187
           |||||||
Sbjct: 207 agtaacc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 187
Length of database: 587
Length adjustment: 8
Effective length of query: 179
Effective length of database: 579
Effective search space:   103641
Effective search space used:   103641
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)