BAC Information

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BAC

Clone NameMSMg01-067K16
Chromosome5 (Build37)
Map Location 3,810,192 - 3,810,515
singlet/doubletsinglet
Overlap geneKrit1
Upstream geneLOC171266, LOC100040892, LOC667565, LOC624254, LOC100040940, LOC667585, LOC100034726, Cdk6, 5830415L20Rik, 1700109H08Rik, C030048B08Rik, Pex1, Gatad1, 4930511M11Rik, Ankib1
Downstream gene4932412H11Rik, LOC100041009, LOC667617, Mterf, Akap9, Cyp51, ENSMUSG00000053178, LOC100041073, Fzd1, LOC667678, Pftk1
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-067K16.T7 (MSMg01no067_k16.b1)MSMg01-067K16.TJ (MSMg01no067_k16.g1)
ACCAG292347AG292348
length693698
length of high quality
(start - end)
286 (66 - 351)328 (74 - 401)
definitionCHROMAT_FILE: MSMg01no067_k16.b1 PHD_FILE: MSMg01no067_k16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:13:50 2005CHROMAT_FILE: MSMg01no067_k16.g1 PHD_FILE: MSMg01no067_k16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:13:50 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGATCCGCGGAATT
CACAATATGATCATGGGAAGTAGACGGGATTTTCCTTAGTTCCTTTACCT
GGCACATATACAGCATCCTCTCCTATCCGCGTCTCCCACTGTCAGAGTCA
AACACTCACGGTGACTGCTGAACCTACATGCCACATCATGATGACTCAAA
CATCATCAATTAACTGAGTAATCTTGGTGCTCTATAATCTGGGGGCTTGG
GGCATGTACACCATGGATCCACGGCGATCAGATCACCCAGTAGGTCCACT
GGCCTAAAAACCCTCTACACTGTCCCTACTTTGTGTTAACAGCCATTAAT
TTGTTTTTAGTCACCCCCCCCCCTGCTCAGGTCCACACAAGGAAGCTACT
CTAAACTACACCCCTACAGAAAATGCCTCAGTGGTCTCACTATATACCAC
CTTACAAATAACAATACAAAAACCAGCATGTGCTCGGTGAGACTAGATTC
CAAACACTGTCCTTTTCCAGTAGTTTATTCTTAGACAATATACTTGTTAT
TTCCACAATAAATTTTGCAATCCTTTTCTATCATAGTCAGCATTCCGCAC
GTTTACCCTTTTCTCATAATCTTTGTAAATCGTCTCCTCCCCGGCCTTCT
GCTTTACATCCTCTCAAACAACTGATATGTCTTTTTCATTCTT
CAATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTTTTTATACTATGAATCAAGTAAGAGT
AAGGAATAATATTTTCTCTATATAAATATAATTAAATCTTAAAGATTAAT
TCAAAGTCTCAAAATTAATTATAGGATCTGCACTGAAAATCAAAATTGCT
TTCTACTATTCTAAGATTTCAAAAGCTCAATTTAAAATTCTTTAGTAGAT
CTGTTCTATACGTGTTATAAATATTATTAAGCAGAATAATTTATAACTAT
AGCTAGCATTTCCTGTCATCATTATAAGTTATATCTATTTCTGGCATATC
CTTTTAAAATTTGCTTTATGACCAGAATACTTTAATTTTAATTTTATTTT
ATGCGTATCACCACTTTGCTTGCAAGTATGTCTGGTTAGCCATGCGCATG
CCTGTTACCTTCAGATACCAGTAGACTGTGTTGGATCCCCTGAATCTGTA
GTTACTGATGGTTGTGACCCATTGTTTGTATTATGGTTACCCTTTCTTGT
TCTTCTGTAATTCCAGTCACTGTTTGCTAACTACTACCTATGCTCTCACT
AGTTCCCTCTCCTGTAAATACTTATTCTCAATCTCTTTCCTTTGGTTTCC
TTTAACTTCTTAATAACCTTTATTGTACCTTTTTTTTCATTTTTCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no067_k16.g1 MSMg01no067_k16.g1 CHROMAT_FILE:
MSMg01no067_k16.g1 PHD_FILE: MSMg01no067_k16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:13:50 2005
         (328 letters)



>mm_chr5_3810009_3810736
          Length = 728

 Score =  596 bits (308), Expect = e-175
 Identities = 320/324 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   tatactatgaatcaagtaagagtaaggaataatattttctctatataaatataattaaat 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 tatactatgaatcaagtaagagtaaggaataatattttctctatataaatataattaaat 448

                                                                       
Query: 65  cttaaagattaattcaaagtctcaaaattaattataggatctgcactgaaaatcaaaatt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 cttaaagattaattcaaagtctcaaaattaattataggatctgcactgaaaatcaaaatt 388

                                                                       
Query: 125 gctttctactattctaagatttcaaaagctcaatttaaaattctttagtagatctgttct 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 gctttctactattctaagatttcaaaagctcaatttaaaattctttagtagatctgttct 328

                                                                       
Query: 185 atacgtgttataaatattattaagcagaataatttataactatagctagcatttcctgtc 244
           |||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| |
Sbjct: 327 atacgtgttataaatattattaagcagaataatttagaactatagttagcatttcctggc 268

                                                                       
Query: 245 atcattataagttatatctatttctggcatatccttttaaaatttgctttatgaccagaa 304
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 267 atcattataagttatatctatttctggcatatcctttgaaaatttgctttatgaccagaa 208

                                   
Query: 305 tactttaattttaattttatttta 328
           ||||||||||||||||||||||||
Sbjct: 207 tactttaattttaattttatttta 184


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 328
Length of database: 728
Length adjustment: 9
Effective length of query: 319
Effective length of database: 719
Effective search space:   229361
Effective search space used:   229361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)