BAC Information

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BAC

Clone NameMSMg01-067M14
Chromosome5 (Build37)
Map Location 113,200,751 - 113,200,887
singlet/doubletsinglet
Overlap geneMyo18b
Upstream geneA230057G18Rik, Cryba4, Crybb1, Tpst2, Tfip11, 2810002G02Rik, Hps4, EG625424, Asphd2, Sez6l, EG625464
Downstream geneAdrbk2, Crybb2, LOC100042920, Crybb3, 2900026A02Rik, Gm854, Rutbc2, Aym1, C530024P05Rik, Cmklr1, LOC381707, D5Ertd40e, Sart3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-067M14.T7 (MSMg01no067_m14.b1)MSMg01-067M14.TJ (MSMg01no067_m14.g1)
ACCAG292437AG292438
length705712
length of high quality
(start - end)
137 (136 - 272)178 (123 - 300)
definitionCHROMAT_FILE: MSMg01no067_m14.b1 PHD_FILE: MSMg01no067_m14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:13:59 2005CHROMAT_FILE: MSMg01no067_m14.g1 PHD_FILE: MSMg01no067_m14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:13:59 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCGCGGAATTC
CTCTCAGGACAATACAGGTGGCGTTTGACAAGGTCAGGGAGAGCGCAGGA
GACTGATCAGAAGCTCTGCTGGAGTCAGTGCCAGAGACCTTGGATGGCAG
CTTTGCTCTTACAGGCAGGAGCAAGCAGGGCTCTGAGCAAGAACTCAGTA
AACAATAGAGAGTTCTGTGCAAAACCCACTCCTCATGGATCAAGCCATAA
ACTAACAGACAACTAACTAGGAGCTGTCACCAGCTTCCGCTCTCCTTGAA
GCAAGTGCCCCTGTTAGCCCTGCTCTCACAGATGTTACCAGCGCAACTTT
TTTTTCTTTTACCCGCCCCCCCCCCTCGTGATACCTTGTTTCTGGCTTAG
ACTCTTCTACCACAAAAAAAAAGAAAAAATCAGCGGTGGAGGCGCCGTTG
TACCCCGAATCCATATGCTCCCCCCTACCCTTCAATCGCAGTTGATTCTT
GTGAGAGAAATATGTATCTGTCCCCCTGCCCCCTTTCCTGAATCTGCTCA
CCTATATTTATCTCCACTAGATTTTACCCTTCACGCCATCCCGTTTTTTT
CGTCCCCCCCCTTTTATCATCCCTGCCATTCTTTCTTTATTTAACTATGA
ATCCCTGATATTTCCTCCTCCCCCCCTCTCAGATTTCATCCTTTTTTCCA
TTCCC
ATAATGTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCCTGATGTGTACCCATACACATGCAT
ACACACATGCACACACACATGCATATACACATGCACAAACACATGCATAT
ACACACATGCATACACACATGCATACACACATATGCAGACACACACATGC
ATACACACATATGCAGACACACACATGCATACACACACATGCATACACGC
ATGCATACATGCTCACACATACACATGGACATGCATGCATACACATGCAT
ACATGTGTACTCACTCTAGTCTGGAGGTCAGTACATGCTGCATCCATCCC
TGTTCTTTTGCTCTCCTACCTGCTGGCATTGCAGATTCTTCTGTCACTCT
CATCTACCCCCCCATATTCATTCTTGATTGTCTCTCCGATGTTCCATGCC
CCTCTGTGCTTTCATCCACCTTTTCCTGTGACATCATGACCTCGAACATA
TATATCTATACTTCAACAACCTTTTCTGCTCCGCCCTGTTATACAATTCA
ACCTTCTTGTCATATACAGTATATACTGACCGTCATTACTCAAAATACGC
CCCTCACTATGATTCTCCTAATTACAAGTATAACCCCTCTTGCATCCGAA
TCTTATTCACCTCATACACCCGACTCTCACCTTCATCCCCTATACTTTTT
CCCTCATCCCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no067_m14.b1 MSMg01no067_m14.b1 CHROMAT_FILE:
MSMg01no067_m14.b1 PHD_FILE: MSMg01no067_m14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:13:59 2005
         (137 letters)



>mm_chr5_113200551_113201087
          Length = 537

 Score =  242 bits (125), Expect = 7e-69
 Identities = 134/137 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   gaccttggatggcagctttgctcttacaggcaggagcaagcagggctctgagcaagaact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gaccttggatggcagctttgctcttacaggcaggagcaagcagggctctgagcaagaact 260

                                                                       
Query: 61  cagtaaacaatagagagttctgtgcaaaacccactcctcatggatcaagccataaactaa 120
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 261 cagtaaacagtagagagttctgtgcaaaacccactcctcatggatcaagccataaacaaa 320

                            
Query: 121 cagacaactaactagga 137
           |||||||||||| ||||
Sbjct: 321 cagacaactaaccagga 337


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 137
Length of database: 537
Length adjustment: 8
Effective length of query: 129
Effective length of database: 529
Effective search space:    68241
Effective search space used:    68241
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)